ngsF-HMM implementation improvements #34
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Also updates plotting to give more informative plots, allows for running ngsF-HMM per population or for the whole dataset together, and enabling or disabling pruning.
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Allow ngsF-HMM pruning settings to differ from PCA/Admix, improve inbreeding plots, allow disabling/enabling pruning for ngsF-HMM, allow choosing to run ngsF-HMM per population (recommended if population structure in dataset) or for the whole dataset.
Closes #28