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Deployed 0edb4d7 to develop with MkDocs 1.6.0 and mike 2.1.1
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Docs Deploy committed Jun 24, 2024
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Expand Up @@ -491,10 +491,10 @@ <h2 id="pipeline-summary">Pipeline Summary</h2>
<li>Relatedness (NGSRelate, IBSrelate)</li>
<li>Identity by state matrix (ANGSD)</li>
<li>Site frequency spectrum (ANGSD)</li>
<li>Watterson's estimator (<em>θ~w~</em>), Nucleotide diversity (<em>π</em>), Tajima's <em>D</em>
<li>Watterson's estimator (<em>θ<sub>w</sub></em>), Nucleotide diversity (<em>π</em>), Tajima's <em>D</em>
(ANGSD)</li>
<li>Individual heterozygosity with bootstrapped confidence intervals (ANGSD)</li>
<li>Pairwise <em>F</em>~ST~ (ANGSD)</li>
<li>Pairwise <em>F</em><sub>ST</sub> (ANGSD)</li>
</ul>
<p>These all can be enabled and processed independently, and the pipeline will
generate genotype likelihood input files using ANGSD and share them across
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