Fix output names

zjnolen · Feb 15, 2024 · cbf8416 · cbf8416
1 parent af65fb5
commit cbf8416
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Showing 2 changed files with 6 additions and 4 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -230,7 +230,8 @@ if config["analyses"]["fst_angsd"]["individuals"]:
 if config["analyses"]["heterozygosity_angsd"]:
     all_outputs.extend(
         [
-            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all_{sites}-filts_heterozygosity.pdf",
+            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all_{sites}-filts_heterozygosity.populations.svg",
+            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all_{sites}-filts_heterozygosity.individuals.svg",
             "results/datasets/{dataset}/analyses/heterozygosity/{dataset}.{ref}_all_{sites}-filts_heterozygosity.html",
         ]
     )
@@ -421,7 +422,8 @@ if config["subsample_analyses"]["heterozygosity_angsd"]:
     all_outputs.extend(
         expand(
             [
-                "results/datasets/{{dataset}}/plots/heterozygosity/{{dataset}}.{{ref}}_all{dp}_{{sites}}-filts_heterozygosity.pdf",
+                "results/datasets/{{dataset}}/plots/heterozygosity/{{dataset}}.{{ref}}_all{dp}_{{sites}}-filts_heterozygosity.populations.svg",
+                "results/datasets/{{dataset}}/plots/heterozygosity/{{dataset}}.{{ref}}_all{dp}_{{sites}}-filts_heterozygosity.individuals.svg",
                 "results/datasets/{{dataset}}/analyses/heterozygosity/{{dataset}}.{{ref}}_all{dp}_{{sites}}-filts_heterozygosity.html",
             ],
             dp=subdp,

diff --git a/workflow/rules/7.3_heterozygosity.smk b/workflow/rules/7.3_heterozygosity.smk
@@ -19,7 +19,7 @@ rule heterozygosity:
     output:
         table="results/datasets/{dataset}/analyses/heterozygosity/{dataset}.{ref}_all{dp}_{sites}-filts_heterozygosity.tsv",
         popplot=report(
-            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all{dp}_{sites}-filts_heterozygosity.populations.pdf",
+            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all{dp}_{sites}-filts_heterozygosity.populations.svg",
             category="Heterozygosity",
             labels=lambda w: {
                 "Filter": "{sites}",
@@ -28,7 +28,7 @@ rule heterozygosity:
             },
         ),
         indplot=report(
-            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all{dp}_{sites}-filts_heterozygosity.individuals.pdf",
+            "results/datasets/{dataset}/plots/heterozygosity/{dataset}.{ref}_all{dp}_{sites}-filts_heterozygosity.individuals.svg",
             category="Heterozygosity",
             labels=lambda w: {
                 "Filter": "{sites}",