diff --git a/workflow/rules/2.1_sample_qc.smk b/workflow/rules/2.1_sample_qc.smk index 5e78749..cf4b857 100644 --- a/workflow/rules/2.1_sample_qc.smk +++ b/workflow/rules/2.1_sample_qc.smk @@ -53,7 +53,7 @@ rule qualimap: runtime="6h", shell: """ - qualimap bamqc -bam {input.bam} --java-mem-size {resources.mem_mb}M \ + qualimap bamqc -bam {input.bam} --java-mem-size={resources.mem_mb}M \ -outdir {output.fold} 2> {log} """ @@ -80,7 +80,7 @@ rule qualimap_userprovided: runtime="6h", shell: """ - qualimap bamqc -bam {input.bam} --java-mem-size {resources.mem_mb}M \ + qualimap bamqc -bam {input.bam} --java-mem-size={resources.mem_mb}M \ -outdir {output.fold} 2> {log} """