Remove thread scaling in fastp

That was for scaling memory on Rackham before
zjnolen · Feb 1, 2024 · 741b47f · 741b47f
1 parent 324e640
commit 741b47f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/1.0_preprocessing.smk b/workflow/rules/1.0_preprocessing.smk
@@ -46,7 +46,7 @@ rule fastp_mergedout:
     params:
         extra=lambda w: config["params"]["fastp"]["extra"]
         + f" --merge --overlap_len_require {get_min_overlap(w)}",
-    threads: lambda wildcards, attempt: attempt * 2
+    threads: 2
     resources:
         runtime=lambda wildcards, attempt: attempt * 480,
         mem_mb=lambda wildcards, input, attempt: int(attempt * (input.size_mb / 2)),