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Fix some formatting
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zjnolen committed Jun 24, 2024
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4 changes: 2 additions & 2 deletions docs/index.md
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Expand Up @@ -44,10 +44,10 @@ sites file has been produced, the pipeline can continue to the analyses.
- Relatedness (NGSRelate, IBSrelate)
- Identity by state matrix (ANGSD)
- Site frequency spectrum (ANGSD)
- Watterson's estimator ($θ_w$), Nucleotide diversity ($π$), Tajima's $D$
- Watterson's estimator (*θ~w~*), Nucleotide diversity (*π*), Tajima's *D*
(ANGSD)
- Individual heterozygosity with bootstrapped confidence intervals (ANGSD)
- Pairwise $F_{ST}$ (ANGSD)
- Pairwise *F*~ST~ (ANGSD)

These all can be enabled and processed independently, and the pipeline will
generate genotype likelihood input files using ANGSD and share them across
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