0

MANIFEST.in

@@ -1 +1 @@
-recursive-include quasinet version.py *.joblib *.c *.so *.pyx src/makefile src/makefile_Cfunc src/*.c src/*
+recursive-include quasinet  *.joblib *.c *.so *.pyx src/makefile src/makefile_Cfunc src/*.c src/*

docs/build/html/genindex.html

@@ -195,6 +195,8 @@ <h2 id="F">F</h2>
 <h2 id="G">G</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="quasinet.html#quasinet.utils.generate_seed">generate_seed() (in module quasinet.utils)</a>
+</li>
       <li><a href="quasinet.html#quasinet.zqnet.get_description_curl">get_description_curl() (in module quasinet.zqnet)</a>
 </li>
       <li><a href="quasinet.html#quasinet.citrees.get_feature_importance">get_feature_importance() (in module quasinet.citrees)</a>

docs/build/html/quasinet.html

@@ -1402,7 +1402,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 <span id="quasinet-qsampling-module"></span><h2>quasinet.qsampling module<a class="headerlink" href="#module-quasinet.qsampling" title="Permalink to this headline">¶</a></h2>
 <dl class="py function">
 <dt class="sig sig-object py" id="quasinet.qsampling.qsample">
-<span class="sig-prename descclassname"><span class="pre">quasinet.qsampling.</span></span><span class="sig-name descname"><span class="pre">qsample</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seq</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qnet</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">steps</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_prob</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_change</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#quasinet.qsampling.qsample" title="Permalink to this definition">¶</a></dt>
+<span class="sig-prename descclassname"><span class="pre">quasinet.qsampling.</span></span><span class="sig-name descname"><span class="pre">qsample</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">seq</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">qnet</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">steps</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">baseline_prob</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">force_change</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">alpha</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">random_seed</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#quasinet.qsampling.qsample" title="Permalink to this definition">¶</a></dt>
 <dd><p>Perform q-sampling for multiple steps.</p>
 <p>Qsampling works as follows: Say you have a sequence and a qnet. Then
 we randomly pick one of the items in the sequence and then change the
@@ -1994,6 +1994,13 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Permalink to this
 <span class="sig-prename descclassname"><span class="pre">quasinet.utils.</span></span><span class="sig-name descname"><span class="pre">find_matching_indices</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">A</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">B</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#quasinet.utils.find_matching_indices" title="Permalink to this definition">¶</a></dt>
 <dd></dd></dl>
 
+<dl class="py function">
+<dt class="sig sig-object py" id="quasinet.utils.generate_seed">
+<span class="sig-prename descclassname"><span class="pre">quasinet.utils.</span></span><span class="sig-name descname"><span class="pre">generate_seed</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="headerlink" href="#quasinet.utils.generate_seed" title="Permalink to this definition">¶</a></dt>
+<dd><p>generates a seed as function of current time and thread id for random number generator seed.
+Must be used when large number of qsamples are drawn in parallel</p>
+</dd></dl>
+
 <dl class="py function">
 <dt class="sig sig-object py" id="quasinet.utils.getNull">
 <span class="sig-prename descclassname"><span class="pre">quasinet.utils.</span></span><span class="sig-name descname"><span class="pre">getNull</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">model</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strtype</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'U5'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#quasinet.utils.getNull" title="Permalink to this definition">¶</a></dt>

docs/source/quasinet.rst

@@ -8,127 +8,126 @@ quasinet.ciforest module
 ------------------------
 
 .. automodule:: quasinet.ciforest
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.citrees module
 -----------------------
 
 .. automodule:: quasinet.citrees
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.curvature module
 -------------------------
 
 .. automodule:: quasinet.curvature
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.export module
 ----------------------
 
 .. automodule:: quasinet.export
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.feature\_importance module
 -----------------------------------
 
 .. automodule:: quasinet.feature_importance
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.feature\_selectors module
 ----------------------------------
 
 .. automodule:: quasinet.feature_selectors
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.metrics module
 -----------------------
 
 .. automodule:: quasinet.metrics
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.osfix module
 ---------------------
 
 .. automodule:: quasinet.osfix
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.qnet module
 --------------------
 
 .. automodule:: quasinet.qnet
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.qsampling module
 -------------------------
 
 .. automodule:: quasinet.qsampling
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.qseqtools module
 -------------------------
 
 .. automodule:: quasinet.qseqtools
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.scorers module
 -----------------------
 
 .. automodule:: quasinet.scorers
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.tree module
 --------------------
 
 .. automodule:: quasinet.tree
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.utils module
 ---------------------
 
 .. automodule:: quasinet.utils
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 quasinet.zqnet module
 ---------------------
 
 .. automodule:: quasinet.zqnet
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 Module contents
 ---------------
 
 .. automodule:: quasinet
-    :members:
-    :undoc-members:
-    :show-inheritance:
+   :members:
+   :undoc-members:
+   :show-inheritance:

version.py

@@ -1 +1 @@
-__version__ = '0.1.61'
+__version__ = '0.1.62'