cleaned up measure_qdistance

zeroknowledgediscovery · Jul 10, 2020 · 4718670 · 4718670
1 parent 98a229b
commit 4718670
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/examples/measure_qdistance.py b/examples/measure_qdistance.py
@@ -1,6 +1,6 @@
 """This is an example how to use measure qdistances using pretrained qnets.
 """
-import pdb;pdb.set_trace()
+
 from quasinet import qseqtools as qt
 from quasinet import qnet
 
@@ -10,11 +10,11 @@
 qt.list_trained_qnets()
 
 # load the sequences from fasta files
-# seq1 = qt.load_sequence(DATA_DIR + 'influenza1.fasta')
-# seq2 = qt.load_sequence(DATA_DIR + 'influenza2.fasta')
+seq1 = qt.load_sequence(DATA_DIR + 'influenza1.fasta')
+seq2 = qt.load_sequence(DATA_DIR + 'influenza2.fasta')
 
 # load qnet
-influenza_qnet = qt.load_trained_qnet('influenza', 'h1n1;na;2009')
+influenza_qnet = qt.load_trained_qnet('influenza', 'h1n1;ha;2009')
 
 # compute qdistance
 qdist = qnet.qdistance(seq1, seq2, influenza_qnet, influenza_qnet)