feature: add dockerfile #593
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4 warnings
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Setup miniconda & zarp env
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Setup miniconda & zarp env
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Setup miniconda & zarp env
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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Setup miniconda & zarp env
/usr/share/miniconda/lib/python3.12/argparse.py:2000: FutureWarning: `remote_definition` is deprecated and will be removed in 25.9. Use `conda env create --file=URL` instead.
action(self, namespace, argument_values, option_string)
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Set up job
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Checkout zarp repository
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Setup miniconda & zarp env
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Update zarp env with root. packages
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Update zarp env with dev. packages
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Display all miniconda & env info
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Run test script for snakemake format
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Run test script for snakemake lint
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Run test script for snakemake rulegraph
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Run test script for snakemake DAG
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Post Setup miniconda & zarp env
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Post Checkout zarp repository
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Complete job
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