diff --git a/build_report.sh b/build_report.sh new file mode 100644 index 0000000..bbd9c1e --- /dev/null +++ b/build_report.sh @@ -0,0 +1 @@ +retype watch \ No newline at end of file diff --git a/node_modules/.bin/retype b/node_modules/.bin/retype new file mode 100644 index 0000000..bb94e36 --- /dev/null +++ b/node_modules/.bin/retype @@ -0,0 +1,16 @@ +#!/bin/sh +basedir=$(dirname "$(echo "$0" | sed -e 's,\\,/,g')") + +case `uname` in + *CYGWIN*|*MINGW*|*MSYS*) + if command -v cygpath > /dev/null 2>&1; then + basedir=`cygpath -w "$basedir"` + fi + ;; +esac + +if [ -x "$basedir/node" ]; then + exec "$basedir/node" "$basedir/../retypeapp-win-x64/retype.js" "$@" +else + exec node "$basedir/../retypeapp-win-x64/retype.js" "$@" +fi diff --git a/node_modules/.bin/retype.cmd b/node_modules/.bin/retype.cmd new file mode 100644 index 0000000..b3b34cf --- /dev/null +++ b/node_modules/.bin/retype.cmd @@ -0,0 +1,17 @@ +@ECHO off +GOTO start +:find_dp0 +SET dp0=%~dp0 +EXIT /b +:start +SETLOCAL +CALL :find_dp0 + +IF EXIST "%dp0%\node.exe" ( + SET "_prog=%dp0%\node.exe" +) ELSE ( + SET "_prog=node" + SET PATHEXT=%PATHEXT:;.JS;=;% +) + +endLocal & goto #_undefined_# 2>NUL || title %COMSPEC% & "%_prog%" "%dp0%\..\retypeapp-win-x64\retype.js" %* diff --git a/node_modules/.bin/retype.ps1 b/node_modules/.bin/retype.ps1 new file mode 100644 index 0000000..8c82fe3 --- /dev/null +++ b/node_modules/.bin/retype.ps1 @@ -0,0 +1,28 @@ +#!/usr/bin/env pwsh +$basedir=Split-Path $MyInvocation.MyCommand.Definition -Parent + +$exe="" +if ($PSVersionTable.PSVersion -lt "6.0" -or $IsWindows) { + # Fix case when both the Windows and Linux builds of Node + # are installed in the same directory + $exe=".exe" +} +$ret=0 +if (Test-Path "$basedir/node$exe") { + # Support pipeline input + if ($MyInvocation.ExpectingInput) { + $input | & "$basedir/node$exe" "$basedir/../retypeapp-win-x64/retype.js" $args + } else { + & "$basedir/node$exe" "$basedir/../retypeapp-win-x64/retype.js" $args + } + $ret=$LASTEXITCODE +} else { + # Support pipeline input + if ($MyInvocation.ExpectingInput) { + $input | & "node$exe" "$basedir/../retypeapp-win-x64/retype.js" $args + } else { + & "node$exe" "$basedir/../retypeapp-win-x64/retype.js" $args + } + $ret=$LASTEXITCODE +} +exit $ret diff --git a/node_modules/.package-lock.json b/node_modules/.package-lock.json new file mode 100644 index 0000000..f3bff67 --- /dev/null +++ b/node_modules/.package-lock.json @@ -0,0 +1,15 @@ +{ + "name": "bonares-handbook", + "lockfileVersion": 3, + "requires": true, + "packages": { + "node_modules/retypeapp-win-x64": { + "version": "3.5.0", + "resolved": "https://registry.npmjs.org/retypeapp-win-x64/-/retypeapp-win-x64-3.5.0.tgz", + "integrity": "sha512-II9fqg6gBBiCdlJ2n5EB89dNusgko9D2qKXaqCgCPuNOS7c7rMgL5bORt3r8mVWbL25gC1U+40KNuchYuzUpvQ==", + "bin": { + "retype": "retype.js" + } + } + } +} diff --git a/node_modules/retypeapp-win-x64/LICENSE b/node_modules/retypeapp-win-x64/LICENSE new file mode 100644 index 0000000..c5a1422 --- /dev/null +++ b/node_modules/retypeapp-win-x64/LICENSE @@ -0,0 +1,248 @@ +Retype Software License Agreement + +Version 3.5.0 + +THIS DOCUMENT IS A LEGAL AGREEMENT (the "License Agreement") BETWEEN OBJECT.NET, INC. ("We," "Us") +AND YOU OR THE ORGANIZATION ON WHOSE BEHALF YOU ARE UNDERTAKING THE LICENSE DESCRIBED BELOW ("You", +"Your") IN RELATION TO THE RETYPE SOFTWARE LIBRARY(IES) (THE "Software"), IN BOTH SOURCE AND OBJECT +CODE FORM, AND/OR ALL RELATED MATERIALS. + +BY DOWNLOADING, INSTALLING, COPYING OR OTHERWISE USING THE SOFTWARE, YOU ACCEPT THE FOLLOWING TERMS +AND CONDITIONS. IF YOU DO NOT AGREE WITH ANY OF THE TERMS OR CONDITIONS OF THIS LICENSE AGREEMENT, +DO NOT PROCEED WITH THE DOWNLOADING, COPYING, INSTALLATION OR ANY OTHER USE OF THE SOFTWARE OR ANY +PORTION THEREOF AS YOU HAVE NO RIGHTS TO DO SO. THE SOFTWARE IS PROTECTED BY UNITED STATES +COPYRIGHT LAWS AND INTERNATIONAL COPYRIGHT LAWS, AS WELL AS OTHER INTELLECTUAL PROPERTY LAWS AND +TREATIES. THE SOFTWARE IS LICENSED, NOT SOLD. + +THIS LICENSE AGREEMENT DESCRIBES YOUR RIGHTS AND RESTRICTIONS WITH RESPECT TO THE SOFTWARE AND +ITS COMPONENTS. + +1. DEFINITIONS + +"Application" means any software, application, or elements that Your Designated Users develop using +the Software or Modifications in accordance with this Agreement; provided that any such Application +(i) must have substantially different functionality than the Software, and (ii) must not allow any +third party to use the Software or Modifications, or any portion thereof, for software development +or application development purposes. + +"Designated User" shall mean a single distinct person for whom You have purchased a license to use +the Software, whether such person is an employee acting within the scope of their employment with +You or Your consultant or contractor acting within the scope of the services they provide for You. +A Designated User can be replaced with a new Designated User only after being a Designated User +for a minimum of six (6) months. + +"End User" means an end user of Your Application who acquires a license to such solely for their +own internal use and not for distribution, resale, user interface design, or software development +purposes. + +"Modification" means: a) any addition to or deletion from the contents of a file included in the +original Software or previous Modifications created by You, and/or b) any new file that leverages +any part of the original Software or previous Modifications. + +"Sample Code" means sample source code included with the Software and designated as "sample code," +"samples," "sample application code," and/or "snippets," and/or found in directories labeled +"samples", "learn", "docs", "examples" or "examples explorer". + +2. LICENSE GRANT + +Subject to the payment of the fee required, and subject to your compliance with all of the terms +and conditions of this Agreement, We grant to You a revocable, non-exclusive, non-transferable and +non-sublicensable license (i) for Designated User(s) to use the Software to create Modifications +and Applications; (ii) for You to distribute the Software and/or Modifications to End Users solely +as integrated into the Applications; and (iii) for End Users to use the Software as integrated into +Your Applications in accordance with the terms of this Agreement. + +In addition to the other terms contained herein, We grant to You a revocable, non-exclusive, +non-transferable and non-sublicensable license to install and use the Software (the "Free License") +for Your internal evaluation, review, and production purposes. The Free License may contain +restricted functionality. You are explicitly not permitted to distribute the Software to any user +outside the Organization on whose behalf you have undertaken this license. We reserve the right to +terminate Your License at any time in Our absolute and sole discretion. Without the purchase and +inclusion of a License Key, the Software may contain restricted functionality, which from +time-to-time may differ in its limitations. If you wish to remove these restrictions, you are +required to purchase a Retype License Key; otherwise you must leave this limitation intact and not +attempt to modify or circumvent it in any way. + +In addition to the other terms contained herein, in the event You have downloaded or received beta +or pre-release versions of the Software (the "Beta Software") from Us, We grant to You a revocable, +non-exclusive, non-transferable and non-sublicensable license to install and use the Beta Software +strictly for Your internal evaluation and review purposes and not for production purposes (the +"Beta License"). You are explicitly not permitted to distribute the Software to any user outside +the Organization on whose behalf you have undertaken this license. Your rights to use the Beta +Software will immediately terminate upon the earlier of (i) the expiration of the evaluation period +established by Us, or (ii) such time that You purchase a license to a non-evaluation version of the +Software. We reserve the right to terminate Your Beta License at any time in Our absolute and sole +discretion. + +YOU ACKNOWLEDGE THAT TRIAL AND/OR BETA SOFTWARE MIGHT PLACE WATERMARKS ON OUTPUT, CONTAIN LIMITED +FUNCTIONALITY, FUNCTION FOR A LIMITED PERIOD OF TIME, OR LIMIT THE FUNCTIONALITY OR TIME OF +FUNCTIONING OF ANY OUTPUT. ACCESS TO AND/OR USE OF ANY FILES OR OUTPUT CREATED WITH SUCH SOFTWARE +IS ENTIRELY AT YOUR OWN RISK. WE ARE LICENSING THE SOFTWARE ON AN "AS IS" BASIS AT YOUR OWN RISK +AND WE DISCLAIM ANY WARRANTY OR LIABILITY TO YOU OF ANY KIND. + +You may modify the "Sample Code" solely for the purposes of designing, developing and testing Your +own Applications. However, You are permitted to use, copy and redistribute Your modified Sample +Code only if all of the following conditions are met: (a) You include Our copyright notice (if any) +with Your Application, including every location in which any other copyright notice appears in such +Application; and (b) You do not otherwise use Our name, logos or other of Our trademarks to market +Your Application, unless otherwise agree by Us in writing. + +3. OWNERSHIP + +This is a license agreement and not an agreement for sale. We reserve ownership of all intellectual +property rights inherent in or relating to the Software, which include, but are not limited to, all +copyright, patent rights, all rights in relation to registered and unregistered trademarks +(including service marks), confidential information (including trade secrets and know-how) and all +rights other than those expressly granted by this Agreement. + +We may provide You with source code so that You can create Modifications and Applications. While You +retain all rights to any original work authored by You as part of the Modifications, We continue to +own all copyright and other intellectual property rights in the Software. + +You must not remove, obscure or interfere with any copyright, acknowledgment, attribution, +trademark, warning or disclaimer statement affixed to, incorporated in or otherwise applied in +connection with the Software. + +4. PROHIBITED USES + +You may not redistribute the Software or Modifications other than by including the Software or a +portion thereof within Your Application. You may not redistribute the Software or Modifications as +part of any Application that can be described as a development toolkit or library, an application +builder, a website builder or any Application that is intended for use by software, application, or +website developers or designers. You may not redistribute any part of the Software documentation. +You may not change or remove the copyright notice from any of the files included in the Software or +Modifications. + +UNDER NO CIRCUMSTANCES MAY YOU USE THE SOFTWARE FOR AN APPLICATION THAT IS INTENDED FOR SOFTWARE OR +APPLICATION DEVELOPMENT PURPOSES. + +UNDER NO CIRCUMSTANCES MAY YOU USE THE SOFTWARE (INCLUDING WITHOUT LIMITATION THE SOURCE CODE +THEREOF) AS THE BASIS FOR OR IN CONNECTION WITH A PRODUCT THAT CONTAINS THE SAME, OR SUBSTANTIALLY +THE SAME, FUNCTIONALITY AS THE SOFTWARE. + +You are required to ensure that the Software is not reused by or with any applications other than +those with which You distribute it as permitted herein. For example, if You install the Software on +a customer's server, that customer is not permitted to use the Software independently of Your +Application, and must be informed as such. + +5. TERMINATION + +This Agreement and Your right to use the Software and Modifications will terminate immediately if +You fail to comply with any of the terms and conditions of this Agreement. Upon termination, You +agree to immediately cease using and destroy the Software or Modifications, including all +accompanying documents. The provisions of sections 4, 5, 6, 7, 8, 9, and 11 will survive any +termination of this Agreement. + +6. DISCLAIMER OF WARRANTIES + +TO THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, WE AND OUR RESELLERS DISCLAIM ALL WARRANTIES AND +CONDITIONS, EITHER EXPRESS OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, IMPLIED WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND TITLE AND NON-INFRINGEMENT, WITH REGARD TO +THE SOFTWARE. WE DO NOT GUARANTEE THAT THE OPERATION OF THE SOFTWARE OR THE CODE IT PRODUCES WILL +BE UNINTERRUPTED OR ERROR-FREE, AND YOU ACKNOWLEDGE THAT IT IS NOT TECHNICALLY PRACTICABLE FOR US +TO DO SO. + +7. LIMITATION OF LIABILITIES + +TO THE MAXIMUM EXTENT PERMITTED BY APPLICABLE LAW, IN NO EVENT SHALL WE OR OUR RESELLERS BE LIABLE +UNDER ANY LEGAL OR EQUITABLE THEORY FOR ANY SPECIAL, INCIDENTAL, INDIRECT OR CONSEQUENTIAL DAMAGES +WHATSOEVER (INCLUDING, WITHOUT LIMITATION, DAMAGES FOR LOSS OF BUSINESS PROFITS, BUSINESS +INTERRUPTION, LOSS OF BUSINESS INFORMATION OR ANY OTHER PECUNIARY LAW) ARISING OUT OF THE USE OF OR +INABILITY TO USE THE SOFTWARE OR THE CODE IT PRODUCES OR ANY OTHER SUBJECT MATTER RELATING TO THIS +AGREEMENT, EVEN IF WE OR OUR RESELLERS HAVE BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. IN ANY +CASE, OUR ENTIRE LIABILITY WITH RESPECT TO ANY SUBJECT MATTER RELATING TO THIS AGREEMENT SHALL BE +LIMITED TO THE GREATER OF (I) THE AMOUNT ACTUALLY PAID BY YOU FOR THE SOFTWARE OR (II) ONE HUNDRED +DOLLARS ($100). + +8. PAYMENT AND TAXES + +If credit has been extended to You by Us, all payments under this Agreement are due within thirty +(30) days of the date We mail an invoice to You. If We have not extended credit to You, You shall +be required to make payment concurrent with the delivery of the Software by Us. Any value added +tax, use tax, sales tax or similar tax ("Transaction Taxes") shall be your sole responsibility. +Each party shall pay all taxes (including, but not limited to, taxes based upon its income) or +levies imposed on it under applicable laws, regulations and tax treaties as a result of this +Agreement and any payments made hereunder (including those required to be withheld or deducted +from payments); provided that You shall be responsible for all Transactions Taxes and shall pay or +reimburse Us for the same upon invoice. Each party shall furnish evidence of such paid taxes as is +sufficient to enable the other party to obtain any credits available to it, including original +withholding tax certificates. Notwithstanding the foregoing, Software ordered through Our resellers +is subject to the fees and payment terms set forth on the applicable reseller invoice. + +9. MISCELLANEOUS + +The license granted herein applies only to the version of the Software available when purchased in +connection with the terms of this Agreement, and to any updates and/or upgrades to which you may be +entitled. Any previous or subsequent license granted to You for use of the Software shall be +governed by the terms and conditions of the agreement entered in connection with purchase or +download of that version of the Software. You agree that you will comply with all applicable laws +and regulations with respect to the Software, including without limitation all export and re-export +control laws and regulations. + +While redistributing the Software or Modifications thereof as part of Your Application, You may +choose to offer acceptance of support, warranty, indemnity, or other liability obligations and/or +rights consistent with this Agreement. However, in accepting such obligations, You may act only on +Your own behalf and on Your sole responsibility, not on our behalf. You shall indemnify Us and our +resellers, or at Our option, defend Us and our resellers against any claim, suit or proceeding +brought against Us or our resellers (i) arising by reason of Your accepting any such support, +warranty, indemnity or additional liability; or (ii) arising out of the use, reproduction or +distribution of Your Application, except to the extent such claim is solely based on the inclusion +of the Software therein. Further, You agree only to distribute the Software pursuant to an +enforceable written agreement for Our benefit that includes all the limitations and restrictions of +this Agreement and is as protective of Us and Software as is this Agreement. For clarity, You must +purchase Designated User licenses for each contractor or consultant who uses the Software to create +an Application on your behalf (including system integrators), whether or not such contractor or +consultant has its own license to the Software. + +You agree to be identified as a customer of ours and You agree that We may refer to You by name, +trade name and trademark, if applicable, and may briefly describe Your business in our marketing +materials and web site. + +You may not assign or transfer this Agreement without Our prior written consent. This Agreement +may be assigned by Us in whole or part and will inure to the benefit of Our successors and +assigns. Notwithstanding the foregoing, in any instance in which You transfer ownership of an +Application on a work for hire basis, You may assign licenses for the total Designated Users that +have used the Software to develop said Application under this Agreement to another party (Assignee) +provided (i) you provide written notice to Us prior to the effective date of such assignment; and +(ii) there is a written agreement, wherein the Assignee accepts the terms of this Agreement. Upon +any such transfer, the Assignee may appoint new Designated Users. + +You acknowledge that this Agreement is complete and is the exclusive representation of our +agreement. No oral or written information given by Us, Our resellers, or otherwise on Our behalf +shall create a warranty or collateral contract, or in any way increase the scope of this Agreement +in any way, and You may not rely on any such oral or written information. No term or condition +contained in any purchase order shall have any force or effect. + +There are no implied licenses or other implied rights granted under this Agreement, and all rights, +save for those expressly granted hereunder, shall remain with Us and our licensors. In addition, no +licenses or immunities are granted to the combination of the Software and/or Modifications, as +applicable, with any other software or hardware not delivered by Us or Our resellers to You under +this Agreement. Your rights under this Agreement apply only to Software, Modifications, and/or +Applications for which all Designated Users are duly licensed hereunder. + +If any provision in this Agreement shall be determined to be invalid, such provision shall be +deemed omitted; the remainder of this Agreement shall continue in full force and effect. If any +remedy provided is determined to have failed for its essential purpose, all limitations of +liability and exclusions of damages set forth in this Agreement shall remain in effect. + +This Agreement may be modified only by a written instrument signed by an authorized representative +of each party. The failure of either party to enforce any provision of this Agreement may not be +deemed a waiver of that or any other provision of this Agreement. + +This Agreement is governed by the law of the Province of Alberta, Canada and all parties +irrevocably submit to the jurisdiction of the courts of the Province of Alberta and further agree +to commence any litigation which may arise hereunder in the courts located in the judicial district +of Edmonton, Alberta, Canada. + +If the Software or any related documentation is licensed to the U.S. Government or any agency +thereof, it will be considered to be "commercial computer software" or "commercial computer +software documentation," as those terms are used in 48 CFR § 12.212 or 48 CFR § 227.7202, and is +being licensed with only those rights as are granted to all other licensees as set forth in this +Agreement. + + Copyright 2008-2021 Object.NET, Inc., All rights reserved. + + Object.NET, Inc. + +1(888)775-5888 + licensing@object.net + object.net \ No newline at end of file diff --git a/node_modules/retypeapp-win-x64/README.md b/node_modules/retypeapp-win-x64/README.md new file mode 100644 index 0000000..0fe6d0a --- /dev/null +++ b/node_modules/retypeapp-win-x64/README.md @@ -0,0 +1,80 @@ +# Retype - Write anything + +[Retype](https://retype.com/) is an :sparkles: ultra-high-performance :sparkles: generator that builds a website based on simple text files. Focus on your writing while Retype builds the rest. + +![](https://user-images.githubusercontent.com/62210/151030834-7f7eb27e-8e5c-44a3-bcc9-f0968336111f.png) + +No coding is required and just one Markdown file, such as a [`README.md`](https://www.makeareadme.com/), will get you started. + +> The [retype.com](https://retype.com/) website was generated using Retype. + +A new Retype powered website can be up and running within seconds once Retype is installed, which itself takes only a few seconds. :+1: + +## Quick start + +You [install](https://retype.com/guides/getting-started/) Retype using [`npm`](https://www.npmjs.com/get-npm), [`yarn`](https://classic.yarnpkg.com/en/docs/install/), or the [`dotnet`](https://dotnet.microsoft.com/download/dotnet-core) CLI. + +From your command line, navigate to a folder location where you have one or more Markdown `.md` files, such as a GitHub or GitLab project. + +Next, choose one of the following tools to first install `retypeapp` and then start Retype by using the [`retype watch`](https://retype.com/guides/cli/#retype-watch) command: + +### NPM + +``` +npm install retypeapp-win-x64 --global +retype watch +``` + +### Yarn + +``` +yarn global add retypeapp-win-x64 +retype watch +``` + +### dotnet + +``` +dotnet tool install retypeapp --global +retype watch +``` + +That's it! Your new Retype website should be up and running. + +## Features + +#### :tada: It just works + +Retype has been built to be easy to use and should _"just work"_ out-of-the-box without any special configuration or troublesome setup. + +#### :zap: Lightning fast + +Don't blink. Retype was built for speed. + +#### :white_check_mark: Easy install + +[Installation](https://retype.com/guides/getting-started/) takes only a few seconds. Then you need at least one Markdown `.md` file which Retype will start building a new website from. + +#### :muscle: Powerful + +Project level [configuration](https://retype.com/configuration/project/) using `retype.yml` unlocks many more Retype features and customization. + +#### :pencil2: Simple formatting + +Pages are [formatted](https://retype.com/guides/formatting/) using Markdown syntax and Retype [components](https://retype.com/components/). Page level [configuration](https://retype.com/configuration/page/) is available, such as customizing the navigation [`label`](https://retype.com/configuration/page/#label) or [`description`](https://retype.com/configuration/page/#description) used by search engines. + +#### :arrows_clockwise: Live reload + +If a change is detected, such as editing and saving an `.md` file, your Retype website will be updated almost instantly within the browser. After running [`retype watch`](https://retype.com/guides/cli/#retype-watch), edit any `.md` file and see your changes appear in the browser almost instantly. + +#### :computer: Host anywhere + +Retype generates a basic HTML website that you can self-host on any web hosting service, such as [GitHub](https://docs.github.com/en/pages/quickstart) or [GitLab](https://docs.gitlab.com/ee/user/project/pages/). No special server-side software or external dependencies are required. You can host your Retype site as a public website or as a private website inside your organization. + +## Support + +Technical support questions are best asked in the [Discussions](https://github.com/retypeapp/retype/discussions). The discussions are monitored 24 hours a day and we will do our best to assist. + +If you find a defect or would like to submit a feature request, please create an [Issue](https://github.com/retypeapp/retype/issues) and we will investigate right away. + +Do you have a general inquiry? Please feel free to contact us at hello@object.net. diff --git a/node_modules/retypeapp-win-x64/bin/LICENSE/command-line-api.LICENSE.txt b/node_modules/retypeapp-win-x64/bin/LICENSE/command-line-api.LICENSE.txt new file mode 100644 index 0000000..cf3ae88 --- /dev/null +++ b/node_modules/retypeapp-win-x64/bin/LICENSE/command-line-api.LICENSE.txt @@ -0,0 +1,23 @@ +The MIT License (MIT) + +Copyright .NET Foundation and Contributors + +All rights reserved. + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. \ No newline at end of file diff --git a/node_modules/retypeapp-win-x64/bin/LICENSE/markdig.LICENSE.txt b/node_modules/retypeapp-win-x64/bin/LICENSE/markdig.LICENSE.txt new file mode 100644 index 0000000..0b2323f --- /dev/null +++ b/node_modules/retypeapp-win-x64/bin/LICENSE/markdig.LICENSE.txt @@ -0,0 +1,23 @@ +Copyright (c) 2018-2019, Alexandre Mutel +All rights reserved. + +Redistribution and use in source and binary forms, with or without modification +, are permitted provided that the following conditions are met: + +1. Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + +2. Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND +ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE +FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL +DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR +SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER +CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE +OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. \ No newline at end of file diff --git a/node_modules/retypeapp-win-x64/bin/LICENSE/mojee.LICENSE.txt b/node_modules/retypeapp-win-x64/bin/LICENSE/mojee.LICENSE.txt new file mode 100644 index 0000000..5b6859f --- /dev/null +++ b/node_modules/retypeapp-win-x64/bin/LICENSE/mojee.LICENSE.txt @@ -0,0 +1,252 @@ +Mojee Software License Agreement + +Version 1.1.0 + +THIS DOCUMENT IS A LEGAL AGREEMENT (the "License Agreement") BETWEEN OBJECT.NET, INC. ("We," "Us") +AND YOU OR THE ORGANIZATION ON WHOSE BEHALF YOU ARE UNDERTAKING THE LICENSE DESCRIBED BELOW ("You", +"Your") IN RELATION TO THE MOJEE SOFTWARE LIBRARY(IES) (THE "Software"), IN BOTH SOURCE AND OBJECT +CODE FORM, AND/OR ALL RELATED MATERIALS. + +BY DOWNLOADING, INSTALLING, COPYING OR OTHERWISE USING THE SOFTWARE, YOU ACCEPT THE FOLLOWING TERMS +AND CONDITIONS. IF YOU DO NOT AGREE WITH ANY OF THE TERMS OR CONDITIONS OF THIS LICENSE AGREEMENT, +DO NOT PROCEED WITH THE DOWNLOADING, COPYING, INSTALLATION OR ANY OTHER USE OF THE SOFTWARE OR ANY +PORTION THEREOF AS YOU HAVE NO RIGHTS TO DO SO. THE SOFTWARE IS PROTECTED BY UNITED STATES +COPYRIGHT LAWS AND INTERNATIONAL COPYRIGHT LAWS, AS WELL AS OTHER INTELLECTUAL PROPERTY LAWS AND +TREATIES. THE SOFTWARE IS LICENSED, NOT SOLD. + +THIS LICENSE AGREEMENT DESCRIBES YOUR RIGHTS AND RESTRICTIONS WITH RESPECT TO THE SOFTWARE AND +ITS COMPONENTS. + +1. DEFINITIONS + +"Application" means any software, application, or elements that Your Designated Users develop using +the Software or Modifications in accordance with this Agreement; provided that any such Application +(i) must have substantially different functionality than the Software, and (ii) must not allow any +third party to use the Software or Modifications, or any portion thereof, for software development +or application development purposes. + +"Designated User" shall mean a single distinct person for whom You have purchased a license to use +the Software, whether such person is an employee acting within the scope of their employment with +You or Your consultant or contractor acting within the scope of the services they provide for You. +A Designated User can be replaced with a new Designated User only after being a Designated User +for a minimum of six (6) months. + +"End User" means an end user of Your Application who acquires a license to such solely for their +own internal use and not for distribution, resale, user interface design, or software development +purposes. + +"Modification" means: a) any addition to or deletion from the contents of a file included in the +original Software or previous Modifications created by You, and/or b) any new file that leverages +any part of the original Software or previous Modifications. + +"Sample Code" means sample source code included with the Software and designated as "sample code," +"samples," "sample application code," and/or "snippets," and/or found in directories labeled +"samples", "learn", "examples" or "examples explorer". + +2. 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Redistributions of source code must retain the above copyright notice, this + list of conditions and the following disclaimer. + +2. Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND +ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. 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IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. \ No newline at end of file diff --git a/node_modules/retypeapp-win-x64/bin/retype.exe b/node_modules/retypeapp-win-x64/bin/retype.exe new file mode 100644 index 0000000..7fc6acf Binary files /dev/null and b/node_modules/retypeapp-win-x64/bin/retype.exe differ diff --git a/node_modules/retypeapp-win-x64/package.json b/node_modules/retypeapp-win-x64/package.json new file mode 100644 index 0000000..18b4c28 --- /dev/null +++ b/node_modules/retypeapp-win-x64/package.json @@ -0,0 +1,21 @@ +{ + "name": "retypeapp-win-x64", + "version": "3.5.0", + "description": "Retype CLI.", + "main": "retype.js", + "bin": { + "retype": "retype.js" + }, + "directories": { + "bin": "bin" + }, + "scripts": { + "test": "echo \"Error: no test specified\" && exit 1" + }, + "keywords": [ + "documentation", + "api docs" + ], + "author": "Object.NET, Inc", + "license": "See LICENSE IN LICENSE" +} \ No newline at end of file diff --git a/node_modules/retypeapp-win-x64/retype.js b/node_modules/retypeapp-win-x64/retype.js new file mode 100644 index 0000000..920c8de --- /dev/null +++ b/node_modules/retypeapp-win-x64/retype.js @@ -0,0 +1,39 @@ +#!/usr/bin/env node +const spawn = require('child_process').spawn; +const path = require('path'); + +var execPath = path.resolve(path.join(__dirname, './bin', './retype')) +var args = []; + +var verbose = false, + reading_args = true; +if (process.argv.length > 2) { + for (var i = 2; i < process.argv.length; i++) { + var arg = process.argv[i]; + if (arg == "--") { + reading_args = false; + } else if (reading_args && process.argv[i] == "--verbose") { + verbose = true; + } + + args.push(process.argv[i]); + } +} + +function verboseLog(message) { + if (verbose) { + console.log("Node.JS wrapper: " + message); + } +} + +function cleanQuit(code) { + verboseLog("exiting with status " + code + "."); + process.exit(code); +} + +var processHandle = spawn(execPath, args, { stdio: 'inherit' }); + +// Continue execution on SIGINT; Retype is supposed to handle it. +process.on("SIGINT", () => {}); + +processHandle.on('exit', (code, signal) => cleanQuit(code)); \ No newline at end of file diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..14ad4f5 --- /dev/null +++ b/package-lock.json @@ -0,0 +1,20 @@ +{ + "name": "bonares-handbook", + "lockfileVersion": 3, + "requires": true, + "packages": { + "": { + "dependencies": { + "retypeapp-win-x64": "^3.5.0" + } + }, + "node_modules/retypeapp-win-x64": { + "version": "3.5.0", + "resolved": "https://registry.npmjs.org/retypeapp-win-x64/-/retypeapp-win-x64-3.5.0.tgz", + "integrity": "sha512-II9fqg6gBBiCdlJ2n5EB89dNusgko9D2qKXaqCgCPuNOS7c7rMgL5bORt3r8mVWbL25gC1U+40KNuchYuzUpvQ==", + "bin": { + "retype": "retype.js" + } + } + } +} diff --git a/package.json b/package.json new file mode 100644 index 0000000..086ae6d --- /dev/null +++ b/package.json @@ -0,0 +1,5 @@ +{ + "dependencies": { + "retypeapp-win-x64": "^3.5.0" + } +} diff --git a/readme.md b/readme.md new file mode 100644 index 0000000..7d11c6b --- /dev/null +++ b/readme.md @@ -0,0 +1,5 @@ + + + + +# Practical handbook for publishing research data in the BonaRes Repository – Tips & Tricks \ No newline at end of file diff --git a/src/_includes/head.html b/src/_includes/head.html new file mode 100644 index 0000000..9a746d4 --- /dev/null +++ b/src/_includes/head.html @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/src/creation_of_templates/data_publication.md b/src/creation_of_templates/data_publication.md new file mode 100644 index 0000000..a208577 --- /dev/null +++ b/src/creation_of_templates/data_publication.md @@ -0,0 +1,245 @@ +--- +label: Data Publication +order: 30 +--- + +# Data Publication + +The publication of research is a central issue in science. Beside traditional scientific papers, data publication became +more important in the past years. Research data are stored and published by data journals, central (thematic) data +repositories or in open databases (e.g., university). To provide proper findability, reusability and citeability of these data, +(persistent) identifiers are necessary, e.g. to assign data sets or authors to research. Most significant is the: + +
+ +### DataCite, DOI + +The DOI system became the standard for information and documentation **(ISO 26324:2012)**. In the DOI system the object is +identified unambiguously to its institution (prefix). There is no limit of the length of either suffix or prefix. +For example, all DOI, which are provided by BonaRes Data Centre, have the prefix: _10.20387_. Metadata can be associated with the object. + +
+ +_Persistent identifier (PI)_ + +Persistent individual digital identifiers for authors and researchers can be used as name lists for creator +and contributor names e.g. in DataCite. Examples are: + +[ORCID](https://orcid.org) (Open Researcher and Contributor ID), [Scopus](https://www.scopus.com/home.uri) (Elsevier), +[Publons](https://publons.com/wos-op/) (Clarivate Analytics, Thomas Reuters), [LinkedIn](http://www.linkedin.com/), +[ResearchGate](https://www.researchgate.net), **ISNI** (ISO 27729:2012 International Standard Name Identifier) and the +[Handle](http://www.handle.net) system. The last was implemented into the digital object identifier (DOI), +specified by the US-standard **ANSI/NISO Z39.84-2005** and managed by the DOI Foundation. Further PIs are Persistent URL (**PURL**), +Uniform Resource Name (**URN**), Archival Resource Keys (**ARK**), and Extensible Resource Identifier (**XRI**). +More information is given by Juha Hakala, 2010 [[1]](http://www.persid.org/downloads/PI-intro-2010-09-22.pdf). + +
+ +_Taxonomies for author contributions to science_ + +### CRediT (Contributor Roles Taxonomy) + +This taxonomy aims to provide transparency to the contributions of researchers to published work, to enable discoverability +and to improve attribution, credit, and accountability. There are 14 categories defined for author’s contribution. + +
+ +### IGSN (International Geo Sample Number) + +Alphanumeric code to provide transparency to the contributions of researchers to scholarly published work, +to enable discoverability and to improve attribution, credit, and accountability. + +
+
+ +## Data journals and publication portals: +#### (selected overview) + +A review of efficient and enhanced publishing, dissemination, sharing and reuse of bio-diversity data are given +by Chavan and Penev (2011) [[2]](https://doi.org/10.1186/1471-2105-12-S15-S2). Data publication in data journals are +classified as “pure” publish data papers only and journals classified as “mixed” publish both. + +
+ +### [Biodiversity Data Journal](https://bdj.pensoft.net) +#### (Pensoft) + +This journal is community peer-reviewed and Open-Access. It is in accordance with the Data Publishing Policies and +Guidelines of Pensoft Publishers. Important standards for this Journal: related data must have DOI or other persistent identifier, XML. + +
+ +### [CODATA Data Science Journal](https://datascience.codata.org) +#### (Ubiquity Press) + +This open access and peer-reviewed data journal is open for papers on data management, +(re)use and databases across all research domains, technology and arts. + +
+ +### [Earth System Science Data ](https://www.earth-system-science-data.net) +#### (Copernicus Publications) + +International, interdisciplinary journal for the publication of articles on original research data (sets). +Important standards for this Journal: Dataset with persistent identifier; [OAI-PMH](https://www.openarchives.org/pmh/); +Metadata in Dublin Core format (oai-dc), full-text XML. + +
+ +### [Ecological Archives / Data Papers](https://esapubs.org/archive/) +#### (Ecologigal Society of America, ESA) + +Provides and hosts supplemental material to ESA articles. Data is registered in official Data Registry of the ESA. +Data are fully peer reviewed, technical review of data and metadata. Data ingest as text format. +Important standards for this Journal: Metadata following [[3]](https://doi.org/10.2307/2269427). + +
+ +### [F1000 Research ](https://f1000research.com) +#### (F1000 Research Ltd, Science Navigation Group) +Data articles are citable and authors are credited when data are reused. Important standards for this Journal: +CC0, no explicit standards but guidelines for different datasets, metadata of date linked to the journal should be, +when possible, in standardized machine readable formats (DataCite). Mostly DataCite as well as DOI were important +standards used in these Journals. The most important Persistent Identifier (PI) used is the DOI. + +
+ +### [Geoscience Data Journal](https://rmets.onlinelibrary.wiley.com/journal/20496060) (Wiley) + +Open Access with scientific peer-review. Important standards for this Journal: Linked data must be stored in an +approved repository and assigned with DOI. + +
+ +### [GigaScience](https://academic.oup.com/gigascience) / [BioMed Central](https://www.biomedcentral.com) + +Is an open access, open-data and open peer-review journal concerning research from life and biomedical science. + +
+ +### [Hindawi publishing ](https://www.hindawi.com/journals/dpis/) +#### (Hindawi Publishing Corporation) + +Was a peer-reviewed and open access journal with dataset papers in all areas of geoscience. The journal ceased new publications in 2017. Important standards for this journal: Content is archived in Portico, LOCKSS. + +
+ +### [Journal of Open Research Software ](https://openresearchsoftware.metajnl.com) +#### (JORS, Software Sustainability Institute) +Publish peer-reviewed (meta-)papers describing research software. + +
+ +### [Journal of Physical and Chemical Research Data ](https://aip.scitation.org/journal/jpr) +#### (AIP Publishing LLC) + +Published by the American Institute of Physics (AIP) for the National Institute of Standards and Technology (NIST); reviews of measurement techniques, critical data evaluation. Important standards for this Journal: Standard Reference Data Act (Public Law 90-396); Article and supplemented material with DOI. + +
+ +### [OpenAgrar](https://www.openagrar.de/content/index.xml) + +This repository collects, disseminates and archives publications, including articles, poster, data, books and interviews from different agricultural research institutes in Germany. + +
+ +### [Open Data Journal for Agricultural Research](https://odjar.org/index) + +Is an open access data journal is a hub for storing, curating and publishing agricultural research data sets. + +
+ +### [Publisso](https://www.publisso.de) + +This open access publication portal is operated by ZB MED and provides different publication platforms for scientists, such as journals, books, congresses videos and repositories. + +
+
+ + +## Data repositories: +#### (selected overview) + +There are numerous repositories for research data, provided by the private or public domain. +Objective of all repositories is to store, archive, manage and/or provide data to the scientific community, +scientists and/or institutions. An overview and recommendations of over 2,000 repositories available are published by re3data.org +(full scale resource of registered repositories across subject areas). + +
+ +### [B2FIND](http://b2find.eudat.eu) + +This tool helps to find and harvest metadata from EUDAT data centres and other repositories. + +
+ +### [BonaRes Data Portal](https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en) + +Is the web platform that gives access to soil- and agricultural research data. Uploaded data can be found using the spatial, +temporal and thematic search options. + +
+ +### [CGIAR](https://www.cgiar.org) + +The CGIAR provides different tools to capturing data and managing experiment and agricultural data, e.g. via +[Field Book ](https://excellenceinbreeding.org/toolbox/tools/field-book)Registry. + +
+ +### [Dryad Digital Repository](https://datadryad.org/stash) + +Dryad is a nonprofit membership organization which governs this data repository. It is a curated open resource for data +underlying scientific publications. + +
+ +### [EOSC](https://eosc-portal.eu) + +The European Open Science Cloud initiative set-up an infrastructure for research data and a knowledge portal for scientists. + +
+ +### [OpenAIRE](https://www.openaire.eu) + +This Open-Access infrastructure (EU - [Funding Program Horizon 2020](https://research-and-innovation.ec.europa.eu/funding/funding-opportunities/funding-programmes-and-open-calls/horizon-2020_en)) +explore publications and data sets, align policies, link research and repositories, and train researchers for open science. + +
+ +### [PANGAEA](https://www.pangaea.de) +#### (Data publisher for earth & environmental science) + +Is an open access library, data publisher and archive for geo-data in earth- and life sciences. +Data are easily accessible, citable and are managed free of charge for data provider and data user. + +
+ +### [Scholix](http://www.scholix.org) +#### (Scholarly Link eXchange) + +This initiative links and connects data and metadata. It aims to establish an interoperability framework information +exchange between literature and data and to set-up an open information framework to describe and understand what data +underpins literature and what literature references data. + +
+ +## Conflicts and solutions + +While the expression of DOI as URN is possible, conversions from DOI into other systems, such as XRI or ARK, are difficult +or impossible, respectively. In contrast to URN, DOI goes beyond identifying an electronic manifestation of a resource. +The DOI-prefix also identifies the location of access. + +:::bonares_reference + +### References + +[1] Hakala, J. (2010). Persistent identifiers: an overview. KIM Technology Watch Report. + +[2] Chavan, V. and L. Penev (2011). The data paper: a mechanism to incentivize data publishing in biodiversity science. +Bmc Bioinformatics 12. + +[3] Michener, W. K., J. W. Brunt, J. J. Helly, T. B. Kirchner and S. G. Stafford (1997). +Nongeospatial metadata for the ecological sciences. Ecological Applications 7(1): 330-342. + +::: \ No newline at end of file diff --git a/src/creation_of_templates/geo_data_services.md b/src/creation_of_templates/geo_data_services.md new file mode 100644 index 0000000..96f94e0 --- /dev/null +++ b/src/creation_of_templates/geo_data_services.md @@ -0,0 +1,85 @@ +--- +label: Geo-data Services +order: 40 +--- +# Geo-data Services + +Geo-data service provides access to a geo-database by local area network (LAN) or the internet using ArcGIS server +or open-source GIS servers, i.e., geo server to view, search and queries into database. +Open Geospatial Consortium (OGC) regulates rules and standards for geo-data services. So called “OGC services” are listed +in this chapter. They are widely accepted and applied by geo-data providers and users. Requirements, types and structure +of services are defined in **EN ISOS 19119:2016** and **ISO 19133:2007** (data types, operations and implementation). + +
+ +### Overview of existing standards + +All OGC standards on web services (OWS) and supporting documents are available to the public at no cost, e.g.: + +
+ +### WMS (Web Map Service) ![](/static/img/two_star.png) + +WMS offer geo-registered map images in different format (e.g. JPEG, PNG) from distributed geo-database system through GIS servers. +It is basically a HTTP/HTTPS link, which provides different request types, two of which are required by any WMS server: +GetCapabilities and GetMap, defines a certain geographic location and layer(s) to be managed. Request types that WMS +optionally support include: _GetFeatureInfo, DescribeLayer_ and _GetLegendGraphic_ ([OpenGeoSpatial](https://www.ogc.org/standards/wms)). +Rules and applications of WMS are provided by **EN ISO 19128:2008**. + +
+ +### WFS (Web Feature Service) ![](/static/img/two_star.png) + +WFS allow any usage that might work with web services to get geographic features from one or more distributed spatial +information system or a map itself. Similar to WMS (mapping output as an image), WFS deal with create, update, delete +and query functions of feature instances from regarding database. WFS serve eight general operations: +_Capabilities, DescribeFeatureType, DescribeFilterModel, Feature, FeatureWithLock, Property, LockFeature_ and _Transaction_. +Rules and applications of WFS are provided by **EN ISO 19142:2010**. + +
+ +### WCAS (Web Catalogue Service) ![](/static/img/two_star.png) +#### Also known as: CSW, Catalogue Services for the Web + +CSW service provides options to publish and searching capabilities of metadata about geospatial data, services, and related +information objects. Request types that CSW services offers include: _GetCapabilities, DescribeByRecord, GetRecords, GetRecordById, +GetDomain, Harvest_ and _Transaction_. Requests can encode the parameters in three different ways: GET with URL parameters, +POST with form-encoded payload and POST with XML payload. + +
+ +### WCS (Web Coverage Service) ![](/static/img/two_star.png) + +WCS returns the original data with its descriptions along with actual semantics. This service allows access into coverage data for client-side rendering. WCS also offers clients to get information of a certain portions based on constraints and certain criteria, similar to WFS and WMS service. + +
+ +### WMTS (Web Map Tile Service) ![](/static/img/two_star.png) + +WMTS makes detailed rendering of a raster data or a large volume of vector data in tiles which supports Key-Value-Pair +(KV, process oriented) encoding interfaces, REST (Representational state transfer) encoding and SOAP encoding. + +
+ +### TJS (Table Joining Service) ![](/static/img/two_star.png) + +The TJS standard joins attribute data with its associated geospatial framework. Attribute data can be stored in one +network and mapped with geographic data into another network which contains geometries for the attribute data. +TJS provides simple web-based services for searching, accessing and using attribute data from different sources which +can generate database, perform analysis and populate maps. + +
+ +### WMC (Web Map Context) ![](/static/img/two_star.png) + +The OGC XML file standard WMC describes meta-information of a WMS (e.g. the URL, different layers within the service, +bounding box rectangle, coordinate system) in XML file, stores and loads XML schema which belongs to it. + +
+ +### WPS (Web Processing Service) ![](/static/img/two_star.png) + +WPS service defines how to implement a geoprocessing service, geographic calculations or models as a service. +It offers simple web-based standardized method of finding, accessing and using of geoprocessing services, +at the same time also direct requests and responses of those services. WPS uses HTTP GET, HTTP POST, +SOAP and XML as a mechanism for describing the data and for interoperability. diff --git a/src/creation_of_templates/index.md b/src/creation_of_templates/index.md new file mode 100644 index 0000000..03514e3 --- /dev/null +++ b/src/creation_of_templates/index.md @@ -0,0 +1,20 @@ +--- +label: Data Provision +icon: download +expanded: true +order: 110 +--- +# Data Provision + +Structured research data, reasonably described by standardized metadata facilitates its provision and increase its +visibility. Open metadata, free and widely accepted geo-data protocols and accepted licenses facilitate data queries and +access for user. + +This chapter provides an overview of metadata standards, possibilities for data publication, accepted licenses and +thesauri and ontologies as applied in soil and agricultural science. + +[!ref](/data_provision/metadata.md) +[!ref](/data_provision/geo_data_services.md) +[!ref](/data_provision/data_publication.md) +[!ref](/data_provision/licenses.md) +[!ref](/data_provision/thesauri_&_ontologies.md) \ No newline at end of file diff --git a/src/creation_of_templates/licenses.md b/src/creation_of_templates/licenses.md new file mode 100644 index 0000000..d496098 --- /dev/null +++ b/src/creation_of_templates/licenses.md @@ -0,0 +1,51 @@ +--- +label: Licenses +order: 20 +--- + +# Licenses + +License information for research data and metadata is important because it informs users what they allowed to do with +data and metadata. Without an explicit license, reuse is restricted. Licenses should not be created individually but +existing licenses should be used. + +
+ +_Overview of existing standards_ + +### Creative Commons (CC) ![](/static/img/two_star.png) + +[Creative Commons](https://creativecommons.org) is a global nonprofit organization that enables sharing and reuse of +creativity and knowledge through the provision of free legal tools. Current version is 4.0. The standard license for all +research data stored in the BonaRes repository is CC-BY that facilitates maximum distribution and usage of data. + +
+ +### Datenlizenz Deutschland ([Data License Germany](https://www.govdata.de/lizenzen)) ![](/static/img/one_star.png) +Was created by federal and state governments in Germany during the work at the Open Data Portal and has been specially +developed for administrative data. Current version is 2.0. + +
+ +### GeoLizenz ![](/static/img/one_star.png) +This license was developed by the German GeoBusiness Commission (GIW-Kommission), which was founded by the Federal Ministry +for Economic Affairs and Energy. The license is intended for geo-data, metadata and geo-data services. + +
+ +### GNU General Public License ![](/static/img/one_star.png) +[GNU](https://www.gnu.org/licenses/gpl-3.0.en.html) is intended to guarantee freedom to share and change all versions +of a program and to make sure it remains free software for all its users. + +
+ +### Open Data Commons (ODC) ![](/static/img/one_star.png) +Open Data Commons is a project of the Open Knowledge Foundation with the aim to provide legal solutions for open data: +[Open Database License ](https://opendatacommons.org/licenses/odbl/)(ODbL) and [Attribution License](https://opendatacommons.org/licenses/by/). + +
+ +### Open Software License (OSL-3.0) ![](/static/img/one_star.png) +[OSL](https://opensource.org/licenses/OSL-3.0) applies to any original work of authorship whose owner has placed the +following licensing notice adjacent to the copyright notice for the Original Work: +“Licensed under the Open Software License version 3.0”. diff --git a/src/creation_of_templates/metadata.md b/src/creation_of_templates/metadata.md new file mode 100644 index 0000000..c5bceb2 --- /dev/null +++ b/src/creation_of_templates/metadata.md @@ -0,0 +1,140 @@ +--- +label: Metadata +order: 50 +--- +# Metadata + +A key precondition to store and share data and to fulfil the FAIR data principles (see Introduction) is the proper +description of research data by metadata. When set-up an own interoperable metadata schema for a data repository it is +very important to use assignable elements of widespread and open metadata standards. + +
+ +_Overview of existing standards_ + +Standards only dealing with metadata for diverse purposes and are published by ISO. Metadata for geographic information +are regulated in **ISO 19115-1ff** series (Geographic information - Metadata). ISO 19115-1:2014 and -2:2009 contain many code +lists on identification information, geometry types and other relevant topics. + +Requirements for metadata related to geographic information services are defined in **EN ISO 19119:2016**. +A technical guideline for encoding of metadata using a XML-schema is provided by **ISO/TS 19139-1:2019-03** (XML schema implementation). +Regulations for metadata are also part of other standards that relate to soil data, for example **INSPIRE DS Soil** or **ISO 28258:2013**. + +The German Infrastructure for Spatial Information (GDI-DE) requires the application of ISO 19115, 19119 and 19139 +in the context of INSPIRE for acquisition and support of metadata. For such purposes the Drafting Team Metadata and +European Commission Joint Research Centre published a technical guideline with INSPIRE implementing rules for metadata [[1]](https://inspire.ec.europa.eu/documents/Metadata/INSPIRE_MD_IR_and_ISO_v1_2_20100616.pdf). + +The Digital Curation Centre (DCC) provides a [list](https://www.dcc.ac.uk/guidance/standards/metadata/list) of common metadata standards. + +The [BonaRes Metadata Schema](https://tools.bonares.de/doi) [[2]](https://doi.org/10.1016/j.cageo.2019.07.005) ![](/static/img/two_star.png) has been created by combining elements of the two schemes INSPIRE (EU) +and DataCite (DOI) since few relevant elements within these two standards have been found. + +
+ +### INSPIRE (European Union) ![](/static/img/two_star.png) + +The INSPIRE directive contains metadata elements on dataset-level that should be applied for documenting metadata for an +entire dataset or a dataset series. Metadata can also be stored on object-level. This means that metadata can be described +for each individual spatial object. Due to the product-oriented approach of INSPIRE, metadata provide not only information +on data quality and validity, but also on conditions for accessibility, use of data, access restriction (including reasons) and charges. + +
+ +### DataCite ![](/static/img/two_star.png) + +The DataCite was developed to provide easy access to scientific data over internet. It provides domain agnostic services +which belongs to the concept of a long term or _persistent_ identifier. DataCite is using _Digital Object Identifiers_ (DOIs) +to register a resource associated with metadata. The objective of DataCite is to increase the acceptance of research data +as legitimate, citable contributions to the scientific record and to archive data for future study. Besides a wide range +of metadata elements, DataCite provides the opportunity to acknowledge contributions of disciplinary work. To enable an +accurate and consistent identification of a resource (e.g. for citation) the metadata scheme offers a list of essential +metadata properties. The da|ra is the DOI registration agency for social and economic research data. +The recent Metadata Scheme is 4.4 [[3]](https://schema.datacite.org/meta/kernel-4.4/). + +
+ +### Dublin Core Metadata Element Set (Version 1.1) ![](/static/img/one_star.png) + +This set is a vocabulary of fifteen properties to describe a resource. It is maintained by the Dublin Core Metadata Initiative +(DCMI). The Dublin Core metadata elements formally endorsed in **ISO 15836-1:2017 and ISO 15836-2:2019, ANSI/NISO Z39.85-2012** +and **RFC 5013** [[4]](https://www.rfc-editor.org/rfc/rfc5013.html). + +
+ +### DDI +#### (Data Documentation Initiative) + +Open standard (metadata model) to describe social and economic research data and survey data. Basic concept is the description +of the complete Data Life Cycle with XML. + +
+ +### GESIS +#### (Leibniz-Institute for the Social Sciences) + +In line with DDI, presentation of detailed metadata and standards for surveys and interviews, e.g. in the following +technical reports: Zenk-Möltgen and Habbel 2012 [[5]](https://www.gesis.org/fileadmin/upload/forschung/publikationen/gesis_reihen/gesis_methodenberichte/2012/TechnicalReport_2012-01.pdf), +Jensen and Schweers 2014 [[6]](https://www.ssoar.info/ssoar/bitstream/handle/document/40297/ssoar-2014-jensen_et_al-Das_erweiterte_Metadatenschema_der_VFU.pdf?sequence=1). + +
+ +### METS +#### (Metadata Encoding & Transmission Standard) + +This is a standard for coding and management of metadata from digital or analogue sources of different formats +(picture, text, audio, video…). Precondition are beside others sections for the presentation of the internal structure +of a digital object, group related files, technical metadata, and information about the source. +METS documents can link and integrate different metadata (e.g. from PREMIS, Dublin CORE or MARC). + +
+ +### PREMIS +#### (PREservation Metadata: Implementation Strategies) + +Initiative for the development and maintenance of internationally recognized long-term archiving metadata standards. +PREMIS aims to develop recommendations, suggestions and best practices for implementing preservation metadata, +further development of the standards, as well as the connection to other standards. + +
+ +### Quali-Service (University of Bremen) +Emerging [data service center ](https://www.qualiservice.org/de/)for qualitative primary data (focus on interviews) +and provision of reports about metadata standards, e.g. Betancort Cabrera and +Haake 2014 [[7]](https://media.suub.uni-bremen.de/handle/elib/3020). + +
+ +### Conflicts and solutions + +### INSPIRE vs. ISO Metadata + +The problematic issue of metadata and data is that almost any piece of data can be metadata in a more specific context. +In the application schema of ISO 28258 any piece of information that can be handled as data should at least be handled as data, +but can additionally be handled as metadata. According to ISO 28258 information e.g. on projects or soil maps can be described +as data (in the form of features) or metadata. In line with INSPIRE this information is metadata of a dataset [[8]](https://tools.bonares.de/media/bonares_series/BonaRes-5PGG-8YRP.pdf). + +
+ +:::bonares_reference + +### References +[1] JRC (2007, update 2013). "INSPIRE Metadata Implementing Rules: Technical Guidelines based on EN ISO 19115 and EN ISO +19119." from click here + +[2] Specka X., Gärtner, P., Hoffmann, C., Svoboda, N., Stecker, M., Einspanier, U., Senkler, K., Zoarder, M.A.M., +Heinrich, U. (2019): The BonaRes metadata schema for geospatial soil-agricultural research data - Merging INSPIRE and +DataCite metadata schemes. Computers and Geosciences 132: 33-41 + +[3] Group, DataCite Metadata Working (2021). DataCite Metadata Schema Documentation for the Publication and Citation of Research Data (v4.4). + +[4] Kunze, J. and T. Baker (2007). IETF RFC 5013. The Dublin Core Metadata Element Set. + +[5] Zenk-Möltgen, W., & Habbel, N. (2012). Der GESIS Datenbestandskatalog und sein Metadatenschema: Version 1.8. + +[6] Jensen, U., & Schweers, S. (2014). Das erweiterte Metadatenschema der VFU soeb 3. + +[7] Betancort Cabrera, N. (2014). Das Qualiservice Metadatenschema: Version 1.1. Qualiservice Technical Reports + +[8] Gärtner, P., N. Svoboda, T. Kühnert, M.A.M. Zoarder and U. Heinrich (2017). The BonaRes Metadata Schema. +BonaRes Data Centre. DOI: 10.20387/BonaRes-5PGG-8YRP +::: \ No newline at end of file diff --git a/src/creation_of_templates/thesauri_&_ontologies.md b/src/creation_of_templates/thesauri_&_ontologies.md new file mode 100644 index 0000000..3225cc2 --- /dev/null +++ b/src/creation_of_templates/thesauri_&_ontologies.md @@ -0,0 +1,307 @@ +--- +label: Thesauri and Ontologies +order: 10 +--- + +# Thesauri and Ontologies + +The use of controlled vocabularies with standardized, generally accepted and clearly assigned identifiers, definitions +and semantics are necessary for smooth data integration and to allow human- and machine readable exchange, query and +reproduction of information. Semantic data annotation by controlled vocabularies is precondition to provide interoperability +of data repositories. Standardizes ontologies enable integration of data and information to the Semantic Web. + +To link data and ensure its reusability it is important that thesauri are published online, using an open license and +endowed with an URI ([W3C](https://www.w3.org/TR/2014/NOTE-ld-bp-20140109/), Best Practices for Publish Linked Data, 2014). +General information for development and operate thesauri are described in **ISO 25964 - Information and documentation – +Thesauri & interoperability with other vocabularies**![](/static/img/two_star.png), that is published in two parts: + +- **1:2011 Thesauri for information retrieval** +This is part one of an international standard for thesauri, that is published in two parts. It provides recommendations +for the development and maintenance of thesauri intended for information retrieval applications. It is applicable to +vocabularies about all types of information resources including knowledge bases and portals, bibliographic databases, text, +etc. It provides a data model and recommended format for the import and export of thesaurus data and can be applied for +monolingual and multilingual thesauri. Based on the data model it includes also an XML schema for data exchange. + +- **2:2013 Interoperability with other vocabularies** +Provides guidelines for high quality information retrieval across networked resources that have been indexed with different +vocabularies or Knowledge Organization Systems (KOS). It helps to set up mappings between different concepts +(classification schema, taxonomies, subject heading schemas, ontologies, name authority lists, terminologies and synonym rings). + +
+ +## Overview of controlled vocabularies in agricultural and environmental science + +### [AGROVOC](http://aims.fao.org) ![](/static/img/two_star.png) + +Is a multilingual vocabulary developed by the FAO. It defines and relates more than 36,000 concepts in 33 languages. +The thesaurus is updated on a monthly basis. It is published as an RDF/SKOS-XL concept schema and accessible as Linked +Data via SPARQL-endpoint. The thesaurus is aligned with 16 vocabularies as related to agriculture. Editing is possible for +registered users through the web-based editing tool VocBench 3. AGROVOC is released under the license CC-BY IGO 3.0 and +published by the web-based SKOS browser “Skosmos”. The JAVA Command Line application “AgroTagger”![](/static/img/one_star.png) +assigns and index semantic terms to textual content and as a keyword extractor from a set of web URLs. It allows to index +web documents identifying main topics and creating RDF triples that link a Web URL to AGROVOC URIs. + +
+ +### [GEMET](https://www.eionet.europa.eu/gemet/en/about/) ![](/static/img/two_star.png) +#### (General Multilingual Environmental Thesaurus) + +This thesaurus was developed by the European Environmental Information and Observation Network (EIONET). It summarizes +different structured vocabularies and aims to define a common terminology for environmental terms in the European context. +It is available in more than 27 languages and consists of more than 6000 records. At least one GEMET keyword is required +to be conform to the INSPIRE metadata schema for geospatial data (ISO 19115, ISO 19119, ISO 19139). + +
+ +### AgrO ![](/static/img/one_star.png) +The Agronomy Ontology (AgrO) is develoed by CGIAR and describes agronomic practices, techniques and variables used in +agronomic experiments. AgrO use traits, ICASA variables, and other existing ontologies. In March 2019 it was in the alpha +phase and nit released officially. + +
+ +### BCO ![](/static/img/one_star.png) +The application ontology Biological Collections Ontology (BCO) includes semantics relations on biodiversity, museum collections, +environmental samples, and ecological surveys. + +
+ +### [CAB Thesaurus](https://www.cabi.org/cabithesaurus/) ![](/static/img/one_star.png) +This open access, multi-lingual thesaurus is operated by CAB International (CABI) science-based organization and includes +almost 3 million terms in world’s science and technical fields. It includes some 250,000 plant, animal and microorganism names. + +
+ +### [Crop Ontology](https://cropontology.org) ![](/static/img/one_star.png) +This ontology includes a large database with ontologies of crops and crop-related terms, structured in the categories +phenotype, breeding, germplasm and trait. Terms are defined by a unique combination of trait, method used and scale. +It is open access and open to improve by the crop community. + +
+ +### [EUROVOC](https://op.europa.eu/en/web/eu-vocabularies) +This multilingual thesaurus maintained by the Publications Office of the European Union for indexing of documents of European institutions. It is available in 24 languages. + +
+ +### GCMD ![](/static/img/one_star.png) +#### Global Change Master Directory +This directory was developed by NASA and can be implemented as thesaurus into a database. Keywords are provided in different +scientific disciplines such as agriculture, atmosphere and hydrology. + +
+ +### ISO 11074:2015 ![](/static/img/one_star.png) +#### Soil quality, Vocabulary +This standard summarizes all relevant terms of soil science in a glossary and is available in a trilingual edition. +It defines a list of terms used in the preparation of other standards in the field of soil quality. +The terms are classified under the following main headings: general terms, description of soil, sampling and assessment +of soils, remediation, and soil ecotoxicology. + +
+ +### NAL ![](/static/img/one_star.png) +#### National Agricultural Library +The United States Department of Agriculture (USDA) produced this agricultural vocabulary. It contains more than 135,000 +terms, is updated annually, bilingual (English, Spanish), and available as Linked Open Data. Provided download formats are XML, +RDF-[OLS](https://www.ebi.ac.uk/ols/index). It is mainly used for indexing and for improving retrieval of agricultural information. + +
+ +### NCBI Taxon ![](/static/img/one_star.png) +The National Center for Biotechnology Information (NCBI) provides an extensive list of field crops including codes + +
+ +### Ontology of Units of Measure and Related Concepts (OM), Version 2.0 ![](/static/img/one_star.png) +This ontology models concepts and relations for units, quantities, measurements and dimensions including conversion factors. +It was developed by the Wageningen University and modelled in OWL 2. + +
+ +### [QUDT](https://www.qudt.org/2.1/catalog/qudt-catalog.html) ![](/static/img/one_star.png) +#### Quantities, Units, Dimensions and Data Types Ontologies +This ontology is under development by the NASA and provides first unified model of quantities, dimensions, units, +and conversion factors. Each unit has its own URI and can thus be used as unique unit-identifier for data-sets. + +
+
+ +## Units Ontology (UO) + +
+ +### [AnaEE Thesaurus](https://vocabulaires-ouverts.inrae.fr/2017/03/13/thesaurus-anaee/) + +
+ +### [EngMath](http://www.ksl.stanford.edu/knowledge-sharing/papers/engmath.html) +This ontology was developed for mathematical modeling and is mostly used by engineers. + +
+ +### EPPO Plant Protection Thesaurus +This European thesaurus includes pest-specific information, names (multi-lingual) and codes for plants, animals and microorganisms. + +
+ +### GACS +The GACS project developed this semantic concept scheme which integrates three important agricultural thesauri: +AGROVOC, CAB and NAL thesauri. GACS was planned to be a hub for all concepts and shared value lists related to agriculture. +In November 2019 the participants agreed that GACS URIs should not be promoted for use since GACS is not actively being maintained. +Data is from 2016 and will not be actively maintained in the future. + +
+ +### LandVoc +This vocabulary was created by Land Portal organization and includes a set of 270 concept about land governance. +LandVoc is mainly derived from AGROVOC but links together other vocabularies. + +
+ +### PROV-O +This [W3C](https://www.w3.org/TR/2014/NOTE-ld-bp-20140109/) ontology provides a set of classes, properties, +and restrictions that can be used to represent and interchange provenance information generated in different systems +and under different contexts. It can also be specialized to create new classes and properties to model provenance +information for different applications and domains. + +
+ +### Semantic Sensor Network Ontology +This ontology was developed by the W3C Semantic Sensor Networks Incubator Group and describes sensors, observations, and +related concepts [[1]](https://www.w3.org/2005/Incubator/ssn/ssnx/ssn). It provides numerous suggestions on the management +of sensor data including metadata of sensor description (e.g. accuracy, detection limit). + +
+
+ +## Overview of vocabulary portals, look-up services, registries, visualization, and gazetteers + +### AgroPortal ![](/static/img/two_star.png) +The web portal provides access to agricultural ontologies and thesauri. Via a search field terms can be entered and concepts of more than 100 agricultural vocabularies. Registered user can provide new ontologies to this web service. + +
+ +### [GODAN](https://vest.agrisemantics.org/about/structure?qt-content_organization_tabs=3#qt-content_organization_tabs) ![](/static/img/two_star.png) +#### Agrisemantics Map of Data Standards +This portal provides a global overview of existing vocabularies for the exchange of agricultural data. It is grouped in 14 main categories, such as “Natural Resources, Earth and Environment”. + +
+ +### GeoNames +This geographical database contains more than 11 million names of places. + +
+ +### [Ontobee](https://ontobee.org) +This ontology register includes some 200 ontologies from natural science, including agriculture. It presents ontology term URIs to HTML web pages (user-friendly web browsing) and to RDF source codes for Semantic Web applications. + +
+ +### Ontology Lookup Service ([OLS](https://www.ebi.ac.uk/ols/index)) +OLS is a web service interface which allows queries from a register with more than 200 ontologies. The lookup service +includes more than 5 million terms. Results link to single ontologies, concepts and output formats. + +
+ +### Open Tree of Life +Was funded by the NSF, describes and visualizes the biological taxonomic classification system and can be used to allocate +taxonomic species names and classes. + +
+ +### [Planteome](https://planteome.org) +The project provides a platform to search and browse plant species, plant traits, phenotypes and gene expressions from different information systems. + +
+
+ +## Overview of tools, specifications, initiatives, data models and ontology languages + +### SKOS ![](/static/img/two_star.png) +#### Simple Knowledge Organization System +SKOS is a [W3C](https://www.w3.org/TR/2014/NOTE-ld-bp-20140109/) recommendation for the representation of thesauri, +classification etc. or any other controlled vocabulary. It gives guidelines to facilitate publication and use of +vocabularies as Linked Data. SKOS is part of the Semantic Web standards built upon RDF and RDFS. SKOS was formal +released in 2009 by W3C as a new standard that connects different KOS and the linked data community. +It defines classes and properties to present common features of a standard thesaurus. + +
+ +### RDF ![](/static/img/two_star.png) +#### Resource Description Framework +RDF is a family of W3C specifications that is applied as a general method for conceptual description or modeling of +information that is implemented in web resources. Via an Application Programming Interface (e.g. RDF API) +a standardized interface can be implemented e.g. in within web-based data portals. + +
+ +### ISO/IEC 13250-2:2006 ![](/static/img/two_star.png) +#### Information technology – Topic Maps +This standard regulates the representation and interchange of knowledge, especially for information retrieval. +Topic Maps enable the linkage of multiple indexes from different sources. The standard defines the abstract structure and +interpretation of Topic Maps, rules for merging them and a set of fundamental subject identifiers. The purpose of the data +model is to define the interpretation of the Topic Maps interchange syntax, and to serve as a foundation for the definition +of supporting standards for canonicalization, querying, constraints, etc. + +
+ +### OWL (Web Ontology Language) ![](/static/img/two_star.png) +Ontology language developed (and updated to OWL 2) by the W3C. It meets the requirements of the Semantic Web. +Ontologies which were written in OWL 2 (e.g. OM) can be used and exchanged as RDF documents. Relations between agricultural +terms, a set of 179 custom relations is provided by e.g. **Agrontology** (as used in AGROVOC). + +
+ +### VocBench ![](/static/img/two_star.png) +Is an open source, web-based multilingual vocabulary editing and workflow tool. It was originally developed and released by +the FAO and the Artificial Intelligence Research Group of the University of Rome Tor Vergata to manage AGROVOC, but now hosts +a still expanding set of vocabularies. + +
+ +### Data Catalog Vocabulary (DCAT) ![](/static/img/one_star.png) +This RDF specification was designed by W3C to facilitate the interoperability between and search across different data catalogues. +DCAT does not make any assumptions about the format of the datasets described in a catalogue. It incorporates terms from other +vocabularies with stable term with appropriate meanings (e.g., foaf:homepage or dct:title). + +
+ +### RDFS ![](/static/img/one_star.png) +#### Resource Description Framework Schema +This RDF schema can be used for sematic data models and was published by the W3C (1998). It includes several classes with +certain properties using the RDF extensible representation data model, providing basic elements for the description of ontologies. + +
+ +### schema.org +Is a collaborative activity founded by technology companies (Google, Yahoo, Microsoft), to develop a standardized ontology +to structure web data, based on existing markup languages. It provides a standardized schema for structured data on the +internet and defines entities and relationships to be used to describe data sets or web pages. It is used to structure data +in the research data search tool “Google Dataset Search”. + +
+ +## Use cases for applied thesauri in databases + +### [AGRIS](https://agris.fao.org/agris-search/index.do) +#### (International System for Agricultural Science and Technology) +Is a global public domain database published by the FAO with more than 8 million records on agricultural science and technology. +The AGRIS Search system allows scientists, researchers and students to perform sophisticated searches using keywords from the +AGROVOC thesaurus, specific journal titles or names of countries, institutions, and authors. The AGRIS is a RDF-aware system +and AGRIS database is exposed as RDF. + +
+ +## Conflicts and solutions +The AGROVOC thesaurus is widely accepted and appreciated within the agricultural science community. However, soil terms +and concepts are often missing or inadequately described or assigned. Terms and concepts are permanently edited and improved by +the experts (AGROVOC Editors) using the editing tool VocBench3. + +:::bonares_reference + +### References + +[1] Group, W3C Semantic Sensor Network Incubator (2009). Semantic Sensor Network Ontology (http://purl.oclc.org/NET/ssnx/ssn). + +::: \ No newline at end of file diff --git a/src/german_translation/index.md b/src/german_translation/index.md new file mode 100644 index 0000000..c2e56f1 --- /dev/null +++ b/src/german_translation/index.md @@ -0,0 +1,43 @@ +--- +label: German Translation +icon: "../static/img/translation_icon.svg" +expanded: true +order: 120 +--- + +# Data management + +The topic data management includes methodical standards to structure and quality assure research data as recorded by +standardized methods. Quality by supervised or unsupervised procedures e.g. data completeness, normal distribution, +integrity, and removal of outliers, is prerequisite for wellmaintained data storage, -exchange, -processing and +-evaluation. Descriptive data should be checked on misspellings, synonyms and inconsistencies to enable clear data +allocation and combination of different data sets. + +When research data are collected, tested, described, and maybe pre-processed (e.g. pedotransferfunctions, biological +models, upscaling) data must be technically prepared to be transferred into the database. At this point internal +database management becomes relevant. Data (base) management includes e.g. rules on the data structure, languages and +formats used. These need to meet the requirements on later data applications such as archiving, evaluation, reuse, and +publishing. Research data management is widely implemented within research institutes in so-called Current Research +Information Systems (CRIS) and in national or international (inter-)disciplinary data repositories. An example for +national agricultural data management is the [PIAF](https://www.gil-net.de/Publikationen/131_26.pdf) system (**P**lanning, +**I**nformation and **A**nalysis for **F**ield trials). An +international and interdisciplinary open data repository for the wide field of environmental science is the [PANGAEA](https://pangaea.de/). + +Internationally accepted Data Management Plans (DMP) and open research data portals may help to plan, manage and publish +research data. Tools and guidelines are provided by open access platforms and repositories such as [ReDBox](https://www.redboxresearchdata.com.au/) (Australia), +[OpenAIRE](https://www.openaire.eu/), [CGIAR](https://www.cgiar.org/), [EUDAT](https://eudat.eu/), [EOSC](https://eosc-portal.eu/), and [INSPIRE](https://inspire.ec.europa.eu/). + +This chapter provides an overview of standards with general requirements on data quality, -structure -formats, and +–types as well as geographic reference systems, units and dimensions. + +[!ref](/data_management/general_conventions.md) +[!ref](/data_management/data_quality.md) +[!ref](/data_management/data_transformation.md) +[!ref](/data_management/data_exchange.md) +[!ref](/data_management/data_archiving.md) + +:::bonares_reference + +## References + +::: \ No newline at end of file diff --git a/src/glossary/data_archiving.md b/src/glossary/data_archiving.md new file mode 100644 index 0000000..54da6e7 --- /dev/null +++ b/src/glossary/data_archiving.md @@ -0,0 +1,41 @@ +--- +label: Data Archiving +order: 10 +--- + +# Data Archiving + +Research data which are replaced by new data and no longer actively used need to be stored permanently on separate storage devices with long durability. To enable long-term search and access to archived data standard digital archival systems should be used. + +
+ +_Overview of existing standards_ + +### DIN 31644:2012-04 - Digital Archives ![](/static/img/two_star.png) + +This standard describes criteria for trustworthy digital archives in general and pre-conditions for the establishment and +operation of digital archives. The German standard contains information on archival packages, data identification (e.g. DOI), +and descriptive, technical and structural metadata. Users of this standard are encouraged to work through the task list +within its takeover project. For practical assistance, a control list is annexed. + +The project [nestor](https://www.langzeitarchivierung.de/Webs/nestor/DE/Home/home_node.html) (=Network of Expertise in Long-Term Storage of Digital Resources) provides an archiving seal based on DIN 31644. + +
+ +### ISO 14721:2012 - Open archival information system, OAIS ![](/static/img/one_star.png) + +Originally developed by NASA and other space companies, OAIS provides frameworks for archival concepts, long-term digital +information preservation, terminologies and concepts for describing and comparing archive architectures. + +
+ +### ISO 16363:2012 - Audit and certification of trustworthy digital repositories + +The ISO sets out comprehensive metrics for what an archive can be used based on OAIS. +Primary Trustworthy Digital Repository Authorization Body (ISO-PTAB). + +
+ +### ISO 16919:2014 Space data and information transfer systems + +This standard specifies the requirements for bodies providing audit and certification of candidate trustworthy digital repositories. diff --git a/src/glossary/index.md b/src/glossary/index.md new file mode 100644 index 0000000..2ace03e --- /dev/null +++ b/src/glossary/index.md @@ -0,0 +1,43 @@ +--- +label: Data Management +icon: "../static/img/glossary.png" +expanded: true +order: 120 +--- + +# Data management + +The topic data management includes methodical standards to structure and quality assure research data as recorded by +standardized methods. Quality by supervised or unsupervised procedures e.g. data completeness, normal distribution, +integrity, and removal of outliers, is prerequisite for wellmaintained data storage, -exchange, -processing and +-evaluation. Descriptive data should be checked on misspellings, synonyms and inconsistencies to enable clear data +allocation and combination of different data sets. + +When research data are collected, tested, described, and maybe pre-processed (e.g. pedotransferfunctions, biological +models, upscaling) data must be technically prepared to be transferred into the database. At this point internal +database management becomes relevant. Data (base) management includes e.g. rules on the data structure, languages and +formats used. These need to meet the requirements on later data applications such as archiving, evaluation, reuse, and +publishing. Research data management is widely implemented within research institutes in so-called Current Research +Information Systems (CRIS) and in national or international (inter-)disciplinary data repositories. An example for +national agricultural data management is the [PIAF](https://www.gil-net.de/Publikationen/131_26.pdf) system (**P**lanning, +**I**nformation and **A**nalysis for **F**ield trials). An +international and interdisciplinary open data repository for the wide field of environmental science is the [PANGAEA](https://pangaea.de/). + +Internationally accepted Data Management Plans (DMP) and open research data portals may help to plan, manage and publish +research data. Tools and guidelines are provided by open access platforms and repositories such as [ReDBox](https://www.redboxresearchdata.com.au/) (Australia), +[OpenAIRE](https://www.openaire.eu/), [CGIAR](https://www.cgiar.org/), [EUDAT](https://eudat.eu/), [EOSC](https://eosc-portal.eu/), and [INSPIRE](https://inspire.ec.europa.eu/). + +This chapter provides an overview of standards with general requirements on data quality, -structure -formats, and +–types as well as geographic reference systems, units and dimensions. + +[!ref](/data_management/general_conventions.md) +[!ref](/data_management/data_quality.md) +[!ref](/data_management/data_transformation.md) +[!ref](/data_management/data_exchange.md) +[!ref](/data_management/data_archiving.md) + +:::bonares_reference + +## References + +::: \ No newline at end of file diff --git a/src/help/Mentioned_Standards.md b/src/help/Mentioned_Standards.md new file mode 100644 index 0000000..955fec7 --- /dev/null +++ b/src/help/Mentioned_Standards.md @@ -0,0 +1,388 @@ +--- +label: Mentioned Standards +order: 10 +--- + +# Mentioned Standards + +**ANSI/NISO Z39.85-2012**: The Dublin Core Metadata Element Set
+ +**ANSI/NISO Z.39.84-2005**: Syntax for the Digital Object Identifier
+ +**ASTM E1910 / E 1910M - 15**: Standard Test Method for Agricultural pH Control Agents, Measurement of pH Change and Buffering Capacity
+ +**DIN 1301-1:2010** - Einheiten - Teil 1: Einheitennamen, Einheitenzeichen
+ +**DIN 1313:1998-12**: Quantities
+ +**DIN 1319-1:1995-01**: Fundamentals of Metrology. Part 1: Basic Terminology
+ +**DIN 1319 1ff** Fundamentals of Metrology (Parts 1-4)
+ +**DIN 4220:2008-11**: Bodenkundliche Standortbeurteilung - Kennzeichnung, Klassifizierung und Ableitung von Bodenkennwerten
+ +**DIN 7807:1995-02**: Agricultural drive wheel tractor tyres in radial construction - Service description (load index - speed symbol) marked tyres
+ +**DIN 8113:2009-02**: Weigh-in-Motion of Road Vehicles
+ +**DIN 11389:1988-04**: Tractors and agricultural machinery - Combines - Definitions, Characteristics, Performance
+ +**DIN 13303-1:1982-05**: Stochastics; probability theory, common fundamental concepts of mathematical and of descriptive statistics; concepts, signs and symbols
+ +**DIN 13303-2:1982-11**: Stochastics - mathematical statistics; concepts, signs and symbols.
+ +**DIN 18121-2:2012-02**: Soil, investigation and testing – Water content – Part 2: Determination by rapid methods
+ +**DIN 18123:2011-04**: Soil, investigation and testing – Determination of grain-size distribution
+ +**DIN 18128:2002-12**: Soil - Investigation and testing - Determination of ignition loss
+ +**DIN 18916:2002-08**: Vegetation technology in landscaping - Plants and plant care
+ +**DIN 18917:2002-08**: Vegetation technology in landscaping — Turf and seeding
+ +**DIN 19745:2006-10**: Soil quality – Principles of the determination of the water content by Time Domain Reflectometry (TDR) and Time Domain Transmissometry (TDT)
+ +**DIN 19746:2005-06**: Soil quality - Determination of mineral nitrogen (nitrat and ammonium) in soil profiles (Nmin laboratory method)
+ +**DIN 19747:2009-07**: Investigation of solids – Pre-treatment, preparation and processing of samples for chemical, biological and physical investigations
+ +**DIN 31644:2012-04**: Information and documentation – Criteria for trustworthy digital archives
+ +**DIN 32645:2008-11**: Chemical analysis – Decision limit, detection limit and determination limit under repeatability conditions – Terms, methods, evaluation
+ +**DIN 32646:2003-12**: Chemical analysis - Limit of detection and limit of determination (quantitation) as processing parameters - Estimation in an interlaboratory test under reproducibility conditions; Terms, meaning, proceeding
+ +**DIN 38402-1:2011-09**: German standard methods for the examination of water, waste water and sludge – General information
+ +**DIN 53804-1:2002-04**: Statistical evaluation - Part 1: Continuous characteristics
+ +**DIN 66115:1983-02**: Particle size analysis - Sedimentation analysis in the gravitational field - pipette method
+ +**DIN 66270:1998**: Information technology — Software document evaluation — Quality characteristics
+ +**DIN 70020-5:1986-12**: Automotive engineering - tyres and wheels - concepts and measuring conditions
+ +**DIN EN 25663:1993** Water quality - Determination of Kjeldahl nitrogen - Method after mineralization with selenium
+ +**DIN EN ISO 3166-1_2014-10**.pdf
+ +**DIN ISO 11843-1:2004** Capability of detection - Terms and definitions
+ +**DIN SPEC 35810:2014-11**: Stakeholder Engagement - Guidelines for decision making processes dealing with climate change
+ +**EN 709:1997**: Agricultural and forestry machinery – Pedestrian controlled tractors with mounted rotary cultivators, motor hoes, motor hoes with drive wheel(s) – Safety;
+ +**EN 12526:1998**: Castors and wheels – Vocabulary, recommended symbols and multilingual dictionary
+ +**EN 12527:1998**: Castors and wheels — Test methods and apparatus
+ +**EN 15934:2012**: Sludge, treated biowaste, soil and waste – Calculation of dry matter fraction after determination of dry residue or water content
+ +**EN 15936:2012**: Sludge, treated biowaste, soil and waste – Determination of total organic carbon (TOC) by dry combustion
+ +**EN 16760:2015**: Bio-based products – Life Cycle Assessment
+ +**EN ISO 520:2010**: Cereals and pulses – Determination of the mass of 1 000 grains
+ +**EN ISO 6709:2009**: Standard representation of geographic point location by coordinates
+ +**EN ISO 9000:2015**: Quality management systems – Fundamentals and vocabulary
+ +**EN ISO 9001:2015**: Quality management systems – Requirements
+ +**EN ISO 9004:2009**: Managing for the sustained success of an organization – A quality management approach
+ +**EN ISO 10012:2003**: Measurement management systems – Requirements for measurement processes and measuring equipment
+ +**EN ISO 14001:2015**: Environmental management systems – Requirements with guidance for use
+ +**EN ISO 14021:2016**: Environmental labels and declarations – Self-declared environmental claims (Type II environmental labelling)
+ +**EN ISO 14031:2013**: Environmental management - Environmental performance evaluation - Guidelines
+ +**EN ISO 14044:2006**: Environmental management – Life cycle assessment – Requirements and guidelines
+ +**EN ISO 14045:2012**: Environmental management – Eco-efficiency assessment of product systems – Principles, requirements and guidelines
+ +**EN ISO 19101-1:2014**: Geographic information – Reference model - Part 1: Fundamentals
+ +**EN ISO 19105:2005**: Geographic information – Conformance and testing
+ +**EN ISO 19106:2006**: Geographic information – Profiles
+ +**EN ISO 19107:2005**: Geographic information – Spatial schema
+ +**EN ISO 19108:2005**: Geographic information - Temporal schema
+ +**EN ISO 19111-2:2012**: Geographic information – Spatial referencing by coordinates – Part 2: Extension for parametric values
+ +**EN ISO 19111:2007**: Geographic information – Spatial referencing by coordinates
+ +**EN ISO 19112:2005**: Geographic information – Spatial referencing by geographic identifiers
+ +**EN ISO 19115-1:2014**: Geographic information - Metadata - Part 1: Fundamentals
+ +**EN ISO 19115-2:2010**: Geographic information – Metadata – Part 2: Extensions for imagery and gridded data
+ +**EN ISO 19116:2006**: Geographic information – Positioning services
+ +**EN ISO 19118:2011**: Geographic information – Encoding
+ +**EN ISO 19119:2016**: Geographic information – Services
+ +**EN ISO 19123:2007**: Geographic information – Schema for coverage geometry and functions
+ +**EN ISO 19125-2:2006**: Geographic information – Simple feature access – Part 2: SQL option.
+ +**EN ISO 19128:2008**: Geographic information – Web map server interface
+ +**EN ISO 19131:2008**: Geographic information – Data product specifications
+ +**EN ISO 19133:2007**: Geographic information – Location-based services – Tracking and navigation.
+ +**EN ISO 19135:2015**: Geographic information – Procedures for item registration
+ +**EN ISO 19136:2009**: Geographic information – Geography Markup Language (GML)
+ +**EN ISO 19142:2010**: Geographic information – Web Feature Service
+ +**EN ISO 19143:2012**: Geographic information – Filter encoding
+ +**EN ISO 19156:2013**: Geographic information – Observations and measurements
+ +**EN ISO 19157:2013**: Geographic information – Data quality
+ +**EN ISO 50001:2011**: Energy management systems - Requirements with guidance for use
+ +**EN ISO 80000-1:2013**: Quantities and units – Part 1: General
+ +**ISO 500-1:2014**: Agricultural tractors - Rear-mounted power take-off types 1, 2, 3 and 4 - Part 1: General specifications, safety requirements, dimensions for master shield and clearance zone
+ +**ISO 520:2010**: Cereals and pulses – Determination of the mass of 1 000 grains
+ +**ISO 2057:1981**: Agricultural tractors Remote control hydraulic cylinders for trailed implements
+ +**ISO 2332:2009**: Agricultural tractors and machinery - Connection of implements via three-point linkage - Clearance zone around implement
+ +**ISO 3534-1:2006**: Statistics – Vocabulary and symbols – Part 1: General statistical terms and terms used in probability
+ +**ISO 3534-2:2006**: Statistics – Vocabulary and symbols – Part 2: Applied statistics
+ +**ISO 3600:2015**: Tractors, machinery for agriculture and forestry, powered lawn and garden equipment - Operator’s manuals - Content and format.
+ +**ISO 4002**: Equipment for sowing and planting (Parts 1-2)
+ +**ISO 4004:1983**: Agricultural tractors and machinery - Track widths
+ +**ISO 4197:1989**: Equipment for working the soil - Hoe blades - Fixing dimensions
+ +**ISO 4226:2007**: Air quality – General aspects – Units of measurement
+ +**ISO 4254**: Agricultural machinery –Safety (Parts 1-12)
+ +**ISO 5527:2015**: Cereals – Vocabulary
+ +**ISO 5663:1984**: Water quality - Determination of Kjeldahl nitrogen - Method after mineralization with selenium
+ +**ISO 5678:1993**: Agricultural machinery; equipment for working the soil; S-tines: main dimensions and clearance zones
+ +**ISO 5679:1979**: Equipment for working soil - Disks -Classification - Main fixing dimensions and specifications
+ +**ISO 5680:1979**: Equipment for working soil - Tines and shovels for cultivators - Main fixing dimensions
+ +**ISO 6107-1:2004** - Water quality – Vocabulary
+ +**ISO 6689-1:1997**: Equipment for harvesting - Combines and functional components - Part 1: Vocabulary
+ +**ISO 6880:1983**: Machinery for agriculture; Trailed units of shallow tillage equipment; Main dimensions and attachment points
+ +**ISO 7168-1:1999**: Air quality – Exchange of data – Part 1: General data format
+ +**ISO 7256:1984**: Sowing equipment - Test methods (Part 1 - 2)
+ +**ISO 8524:1986**: Equipment for distributing granulated pesticides or herbicides -Test method
+ +**ISO 8601:2004**: Data elements and interchange formats – Information interchange – Representation of dates and times
+ +**ISO 8909-1:1994**: Forage harvesters - Part 1: Vocabulary
+ +**ISO 8910:1993**: Machinery and equipment for working the soil - Mouldboard plough working elements- Vocabulary
+ +**ISO 8945:1989**: Equipment for working the soil - Rotary cultivator blades - Fixing dimensions
+ +**ISO 8947:1993**: Agricultural machinery - equipment for working the soil - S-tines - test method
+ +**ISO 9000:2015**: Quality management systems – Fundamentals and vocabulary
+ +**ISO 9001:2015**: Quality management systems – Requirements
+ +**ISO 9004:2009**: Managing for the sustained success of an organization – A quality management approach
+ +**ISO 9169:2006**: Air quality –Definition and determination of performance characteristics of an automatic measuring system
+ +**ISO 10005:2005**: Quality management systems – Guidelines for quality plans
+ +**ISO 10006:2003**: Quality management systems - Guidelines for quality management in projects
+ +**ISO 10007:2003**: Quality management systems - Guidelines for configuration management (ISO 10007:2003)
+ +**ISO 10012:2003**: Measurement management systems – Requirements for measurement processes and measuring equipment
+ +**ISO 10381**: Soil quality - Sampling (Part 1-6)
+ +**ISO 10390:2005** - Soil quality - Determination of pH
+ +**ISO 10693:1995**: Soil quality – Determination of carbonate content – Volumetric method
+ +**ISO 11063:2012**: Soil quality – Method to directly extract DNA from soil samples
+ +**ISO 11074:2015**: Soil quality – Vocabulary
+ +**ISO 11260:1994**: Soil quality – Determination of effective cation exchange capacity and base saturation level using barium chloride solution.
+ +**ISO 11261:1995**: Soil quality - Determination of total nitrogen - Modified Kjeldahl method
+ +**ISO 11272:1998**: Soil quality – Determination of dry bulk density
+ +**ISO 11274:1998**: Soil quality – Determination of the water-retention characteristic – Laboratory methods
+ +**ISO 11276:1995**: Soil quality – Determination of pore water pressure –Tensiometer method
+ +**ISO 11277:1998**: Soil quality – Determination of particle size distribution in mineral soil material – Method by sieving and sedimentation
+ +**ISO 11461:2001**: Soil quality – Determination of soil water content as a volume fraction using coring sleeves – Gravimetric method
+ +**ISO 11466_1995**: Soil quality - Extraction of trace elements soluble in aqua regia
+ +**ISO 11783-1:2007**: Tractors and machinery for agriculture and forestry — Serial control and communications data network - Part 1: General standard for mobile data communication
+ +**ISO 11786:1995**: Agricultural tractors and machinery - Tractor-mounted sensor interface - Specifications
+ +**ISO 12782-1:2012**: Soil quality - Parameters for geochemical modelling of leaching and speciation of constituents in soils and materials – Part 1: Extraction of amorphous iron oxides and hydroxides with ascorbic acid
+ +**ISO 12782-2:2012**: Soil quality – Parameters for geochemical modelling of leaching and speciation of constituents in soils and materials – Part 2: Extraction of crystalline iron oxides and hydroxides with dithionite
+ +**ISO 12782-3:2012**: Soil quality – Parameters for geochemical modelling of leaching and speciation of constituents in soils and materials – Part 3: Extraction of aluminium oxides and hydroxides with ammonium oxalate/oxalic acid
+ +**ISO 12782-4:2012-09**: Soil quality – Parameters for geochemical modelling of leaching and speciation of constituents in soils and materials – Part 4: Extraction of humic substances from solid samples
+ +**ISO 12782-5:2012**: Soil quality – Parameters for geochemical modelling of leaching and speciation of constituents in soils and materials – Part 5: Extraction of humic substances from aqueous samples
+ +**ISO 13065:2015**: Sustainability criteria for bioenergy
+ +**ISO 13878:1998**: Soil quality -- Determination of total nitrogen content by dry combustion ("elemental analysis")
+ +**ISO 14001:2015**: Environmental management systems – Requirements with guidance for use
+ +**ISO 14021:2016**: Environmental labels and declarations – Self-declared environmental claims (Type II environmental labelling)
+ +**ISO 14031:2013**: Environmental management - Environmental performance evaluation - Guidelines
+ +**ISO 14040:2006**: Environmental management - Life cycle assessment - Principles and framework.
+ +**ISO 14044:2006**: Environmental management – Life cycle assessment – Requirements and guidelines
+ +**ISO 14045:2012**: Environmental management – Eco-efficiency assessment of product systems – Principles, requirements and guidelines
+ +**ISO 14063:2006**: Environmental management – Environmental communication – Guidelines and examples
+ +**ISO 14240-2_2011**: Soil quality – Determination of soil microbial biomass – Part 2: Fumigation-extraction method.
+ +**ISO 14269-1:1997**: Tractors and self-propelled machines for agriculture and forestry - Operator enclosure environment - Part 1: Vocabulary
+ +**ISO 14688**: Geotechnical investigation and testing – Identification and classification of soil (1-3)
+ +**ISO 14721:2012**: Space data and information transfer systems - Open archival information system (OAIS) - Reference model
+ +**ISO 15178:2000**: Soil quality—Determination of total sulfur by dry combustion
+ +**ISO 15685:2012**: Soil quality – Determination of potential nitrification and inhibition of nitrification – Rapid test by ammonium oxidation
+ +**ISO 15709:2002**: Soil quality – Soil water and the unsaturated zone – Definitions, symbols and theory
+ +**ISO 15903:2002 (E)**: Soil quality— Format for recording soil and site information
+ +**ISO 16231:2013**: Self-propelled agricultural machinery – Assessment of stability (Part 1-2)
+ +**ISO 16269series**: Statistical interpretation of data
+ +**ISO 17628:2015**: Geotechnical investigation and testing – Geothermal testing – Determination of thermal conductivity of soil and rock using a borehole heat exchanger
+ +**ISO 17892-2:2014**: Geotechnical investigation and testing – Laboratory testing of soil – Part 2: Determination of bulk density.
+ +**ISO 17892-3:2015**: Geotechnical investigation and testing – Laboratory testing of soil – Part 3: Determination of particle density
+ +**ISO 17892-4:2014**: Geotechnical investigation and testing – Laboratory testing of soil – Part 4: Determination of particle size distribution
+ +**ISO 17892-5:2014**: Geotechnical investigation and testing – Laboratory testing of soil – Part 5: Incremental loading oedometer test
+ +**ISO 17892-6:2014**: Geotechnical investigation and testing – Laboratory testing of soil – Part 6: Fall cone test
+ +**ISO 17962:2015**: Agricultural machinery – Equipment for sowing – Minimization of the environmental effects of fan exhaust from pneumatic systems
+ +**ISO 19103:2015(E)**: Geographic information — Conceptual schema language
+ +**ISO 19115-2:2009**: Geographic information – Metadata – Part 2: Extensions for imagery and gridded data
+ +**ISO 19157:2013**: Geographic information – Data quality
+ +**ISO 20988_2007**: Air quality – Guidelines for estimating measurement uncertainty
+ +**ISO 22475-1:2006**: Geotechnical investigation and testing – Sampling methods and groundwater measurements – Part 1: Technical principles for execution
+ +**ISO 22476-2:2005**: Geotechnical investigation and testing – Field testing – Part 2: Dynamic probing
+ +**ISO 23611**: Soil quality — Sampling of soil invertebrates (Parts 1-6)
+ +**ISO 25177:2008**: Soil quality – Field soil description
+ +**ISO 26000:2010**: Guidance on social responsibility
+ +**ISO 26322-1:2008**: Tractors for agriculture and forestry - Safety - Part 1: Standard tractors
+ +**ISO 28258:2013**: Soil quality – Digital exchange of soil-related data
+ +**ISO/DIS 5681:2014**: Equipment for crop protection - Vocabulary
+ +**ISO/DIS 18400:2015** Soil quaility - Sampling
+ +**ISO/DIS 19109:2013**: Geographic information – Rules for application schema
+ +**ISO/DIS 19110:2013**: Geographic information – Methodology for feature cataloguing
+ +**ISO/DIS 19119:2015**: Geographic information – Services
+ +**ISO/IEC 8859-1:1998**: Information technology - 8-bit single-byte coded graphic character sets - Part 1: Latin alphabet No. 1 + +**ISO/IEC 10646:2014**: Information technology - Universal Coded Character Set (UCS)
+ +**ISO/IEC 11404:2007**: Information technology — GeneralPurpose Datatypes (GPD)
+ +**ISO/IEC 13250-2:2006**: Information technology - Topic Maps - Part 2: Data model
+ +**ISO/IEC 17025:2005**: General requirements for the competence of testing and calibration laboratories
+ +**ISO/IEC 19501:2005**: Information technology - Open Distributed Processing - Unified Modeling Language (UML) Version 1.4.2
+ +**ISO/TR 14047:2012**: Environmental management - Life cycle assessment - Illustrative examples on how to apply ISO 14044 to impact assessment situations
+ +**ISO/TR 19120:2001**: Geographic information - Functional standards
+ +**ISO/TR 19121:2000**: Geographic information - Imagery and gridded data
+ +**ISO/TS 19139:2007**: Geographic information - Metadata -XML schema implementation
+ +**VDI 3786**: Environmental meteorology - Meteorological measurements (Parts 1-4)
+ +**VDI 3957:2014**: Biological measuring techniques for the determination and evaluation of effects of air pollutants on plants (biomonitoring) - Fundamentals and aims
+ +**VDI 4070-1:2016-02**: Sustainable management in small and medium-sized enterprises - Guidance notes for sustainable management
+ +**VDI 4605:2016-02** - Evaluation of sustainability
+ +**VDI 4800-1:2016-01**: Resource efficiency - Methodological principles and strategies
+ +**VDI 4800-2:2016-03**: Resource efficiency -Evaluation of the use of raw materials.
+ +**VDI 6101:2014-07**: Machine operation with regard to the trafficability of soils used for agriculture
diff --git a/src/help/code_lists.md b/src/help/code_lists.md new file mode 100644 index 0000000..83d163d --- /dev/null +++ b/src/help/code_lists.md @@ -0,0 +1,1887 @@ +--- +label: Code Lists +order: 20 +--- + +# Code Lists + +Code lists are useful tools for expressing longer lists of potential values and help to organize and harmonize databases. +Whenever a universal accepted code exists for a certain parameter, it is recommended extend the database with a code column. + +
+ +## Soil survey + +In the Tables 11-16 the most important code lists for field soil survey, description and classification, as parts of +national and international standards, are listed: + +### Table 10 +_Overview of code lists on soil data survey_ +
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
StandardCode list
German Soil Survey Guideline (KA5) +[1]see Table 11
DIN 4220:2008-11 see Table 12
Guideline Soil assessment see Table 13
FAO Guidelines for Soil descriptionsee Table 14
ISO 25177:2019see Table 15
INSPIRE Code List, e.g. WRB for Reference Soil Groups, Qualifiers and Specifierssee Table 16
+
+ +
+ +For the German Soil Survey Guideline all parameters for field soil description provided with code lists are given in Table 11. +The number of the field in the official form for soil scientific profile description, where a certain soil parameter has +to be documented is also listed in the table. The accessibility of code lists is given by the corresponding page number +in the guideline, number and title of code list. Code lists for deduction of soil parameters are not mentioned in this +overview, because they are not relevant for field soil description. + +Table 12 gives an overview of parameters in the German standard **DIN 4220** for soil feature designation and classification +as provided by code lists. Code lists used for deduction of soil parameters are not listed, as they are not required for +field soil description. + +
+ +### Table 11 +_Parameters for field soil description provided with code lists in German Soil Survey Guideline (Bodenkundliche Kartieranleitung KA5, 5th edition, 2005)_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Parameter (EN)Parameter (D)fieldp.Code List-No.Code list name
sampling typeBeprobung Entnahmeart-40Tab. 2Entnahmeart und Definition der Probenahme
exploration typeAufschlussart956List 2Aufschlussart/Aufnahmeintensität/Probenahme
acquisition intensityAufnahmeintensität956List 2-
slope gradient classHangneigungsstufe1158Tab. 6Einstufung der Hangneigung
expositionExposition1259Abb. 5Windrose zur Kennzeichnung der Exposition
curvatureWölbung1360Tab. 7Einstufung der Wölbungstärke
relief type (simple)einfacher Reliefformtyp14 63
64
65
65 		List 3
List 4
List 5
List 6 		Reliefformtypen
+Untergliederung des Kulminationsbereichs
+Untergliederung des Tiefenbereichs
+Untergliederung des Hanges +
relief type (complex)komplexer Reliefformtyp1466
+66
+67 		List 7
+List 8
+List 9		Komplexe Reliefformtypen
+Erhebung
+Geschlossene Hohlform
micro reliefMikrorelief1669List 10Rauhigkeit R der Reliefoberfläche
position in reliefLage im Relief1769List 11Lage im Relief
denudation/ +accumulation processesAbtrags/Auftrags-vorgänge1870List 12Abtrags-/Auftragsvorgänge und deren Erscheinungen
denudation/accumu-lation phenomenaAbtrags/Auftrags-erscheinungen1870List 12-
land use/ +surface sealingAbtrags/Auftrags-erscheinungen1872List 13Nutzungsart/Versiegelung
vegetationVegetation2073List 14Vegetation
weather conditionsWitterung2174Tab. 9Kennzeichnung der Witterungsverhältnisse
anthropogenic changesanthropogene Veränderungen2275List 15Anthropogene Veränderungen
lumbricids lifeform typeLumbricidae Lebensformtyp2377
77		Tab. 10
Tab. 11		Lebensformtypen und
+Abundanzklassen der Lumbriciden
remarks (acquisition conditions)Bemerkungen +(zur Aufnahme-situation)2479List 16Flächen mit Sonderbestimmungen
lower horizon boundary formHorizontuntergrenze Form2680Abb. 11aForm (Gestalt) der Horizontgrenze
lower horizon boundary orientationHorizontuntergrenze Lage2681Abb. 11bLage (Neigung) der Horizontgrenze zur Oberfläche
lower horizon boundary sharpnessHorizontuntergrenze Schärfe2681List 17Schärfe (Deutlichkeit) der Horizontgrenzen
horizon symbolsHorizontsymbole2786ffTab. 12Vorgesehene Kombinationen von Haupt- und Zusatzsymbolen
color (without color-charts)Farbe (ohne Fabtafeln28110List 18Farbbezeichnungen
humus contentHumusgehalt29112Tab. 15Einstufung des Humusgehaltes (organische Substanz) von Böden
hydromorphology oxidativeHydromorphie oxidativ30113Tab. 16Erscheinungsarten horizont-differenzierender
+Fe- und Mn-Verbindungen in hydromorphen Böden
hydromorphology reductiveHydromorphie reduktiv31113Tab. 16-
soil moistureBodenfeuchte32115Tab. 17-
consistencyKonsistenz33115Tab. 17Konsistenz bindiger Böden, Konsistenz-grenzen und
zugehörige Bodenfeuchte
other pedogenic featuressonstige pedogene Merkmale34114-Organische Merkmale, Mineralische Merkmale
soil structure typeGefügeform35117
118
118
119		List 19
List 20
List 21
List 22		Grundgefüge
+Makrogrobgefüge
+Makrofeingefüge
+Gefügefragmente
compactnessLagerungsart36121List 23Lagerungsart
porosityPorenanteil38124Abb. 13Bestimmung des Makroporenanteils
tubes, channelsRöhren, Gänge39123List 24Röhren, Gänge
bulk densityLagerungsdichte40125Tab. 20Bestimmungsschlüssel für die Ansprache der
effektiven Lagerungsdichte
substance vol. (for peaty soil)Substanzvolumen (bei Moorböden)40127Tab. 22Ansprache des Substanzvolumens SV bei Moorböden
degree of peat decompositionZersetzungsstufe (bei Torf)40128Tab. 23Bestimmung der Zersetzungsstufen und des
Zersetzungsgrades von Torfen
root densityDurchwurzelungs-intensität41129Tab. 24Einstufung der Durchwurzelungsintensität
fine root densityFeinwurzeldichte41a129Tab. 24-
coarse root densityGrobwurzeldichte41b129Tab. 24-
rootable depth classDurchwurzelbarkeit41130Tab. 25Einstufung der Durchwurzelungbarkeit
(physiologische Gründigkeit)
substrate genesisSubstratgenese43137Tab. 137Gliederung der Substratgenese auf den verschiedenen Niveaus
soil typeBodenart44a144Tab. 30Definition der Feinbodenarten nach Fraktionen,
+Schlüssel zur Bestimmung der Bodenart im Gelände (Fingerprobe)
sand soil typeSandbodenart44a148Tab. 31Kornfraktionen Bodenart „reiner Sand“ Ss
coarse soil fractionGrobbodenfraktion44b150
150		Tab. 32
Tab. 33		Untergliederung + Kornfraktionen des Grobbodens +Einstufung des Grobbodens
peat typeTorfart44a161Tab. 36Botanische Gliederung verbreiteter Torfe und ihre +Zuordnung zu den bodenkundlichen Torfartengruppen
mud typeMuddenart44a164List 25Mudden
carbon content (substrate)Kohlenstoffgehalt (Substrat)45166Tab. 38Einteilung des Kohlenstoffgehaltes bei der Substratartenansprache im Feld 42
carbonate contentCarbonatgehalt46169Tab. 40Kennzeichnung des Carbonatgehaltes des Feinbodens und bei der Substratartenansprache im Feld 42
parent rockBodenausgangsgestein47a174Tab. 43Bodenausgangsgesteine
periglacial cover bedsPeriglaziäre Lagen47b181List 26Periglaziäre Lagen
coarse soil componentsGrobboden-komponenten47c174Tab. 43Bodenausgangsgesteine
substantial inhomogeneitiesSubstanzielle Inhomogenitäten47d183List 27Substanzielle Inhomogenitäten
structural inhomogeneitiesStrukturelle Inhomogenitäten47e184List 28Strukturelle Inhomogenitäten (sofern nicht substanziell differenzierbar)
stratigraphyStratigrafie48187List 29Stratigrafische Einheiten
remarks (horizon)Bemerkungen (zum Horizont)49190List 30Geruch
soil typeBodentyp50199List 31Bodensystematische Abteilungen, Klassen und Typen mit Horizontfolgen
humus formHumusform50264Tab. 46Kriterien und diagnostische Horizontmerkmale der Varietäten
ground water levelGrundwasserstufe53a311Tab. 59Einstufung der Grundwasserstände
soil wetness classVernässungsgrad54315Tab. 61Ermittlung des Vernässungsgrades für Grund-, Stau- und Haftnässeböden
degree of erosionErosionsgrad55316Tab. 62Erosionsgrad und bodensystematische Ansprache
+
+ +
+ +### Table 12 +_Parameters for field soil description provided with code lists in DIN 4220:2008-11_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Parameter (EN)Parameter (D)fieldp.Code list name
soil and site characteristicsBoden- und Standorteigenschaften101Einstufung von Boden- und Standorteigenschaften
size and scale of featuresGrößen und Skalenbereich von Erscheinungsformen112Einstufung von Größen, Einteilung in Mikro-, Meso-, Makroskala
area percentage of featuresFlächenanteil von Erscheinungsformen113Flächenanteil von Erscheinungsformen in Böden
soil texture class (fine soil)Bodenart (Feinboden)124Kornfraktionen des Feinbodens
coarse fragmentsBodenart (Grobboden)125Kornfraktionen des Grobbodens (Bodenskelett)
soil texture main group, soil texture groupBodenarten-Hauptgruppe, Bodenarten-Gruppe136Bodenarten (Gruppierung, Benen-nung, Kurzzeichen, Kornfraktionen)
sand texture classesSandbodenart147Unterteilung der Bodenart reiner Sand (0-5% Ton, 0-10% Schluff)
coarse soil sharesGrobboden Beimengungen158Einteilung Gemengeanteile Grobboden
humus contentHumusgehalt169Einstufung Humusgehaltes (organische Substanz) von Böden
rootable depth classDurchwurzelbarkeit1710Einstufung Durchwurzelbarkeit (physiologische Gründigkeit)
root densityDurchwurzelungsintensität1711Einstufung Durchwurzelungsintensität
dry bulk densityTrockenrohdichte1812Einstufung Trockenrohdichte
ground water levelGrundwasserstufe1813Grundwasserstufen in Abhängigkeit mittl. Grundwasserflurabständen
capillary spaceKapillarraum1914Einstufung geschlossener Kapillarraum
field capacityFeldkapazität2016Einstufung Feldkapazität
plant available waternutzbare Feldkapazität2017Einstufung nutzbare Feldkapazität
soil porosityLuftkapazität2118Einstufung der Luftkapazität
water content at wilting pointTotwasser2119Einstufung des Totwassers
total pore volumeGesamtporenvolumen2120Einstufung Gesamtporenvolumens und Porenziffer
water permeabilityWasserdurchlässigkeit2221Einstufung Wasserdurchlässigkeit
air permeabilityLuftdurchlässigkeit2222Einstufung Luftdurchlässigkeit
soil reaction Bodenreaktion (pH-Wert)2323Einstufung Bodenreaktion
redox potentialRedoxspotenzial2324Einstufung Redoxbedingung
CECKAK2425Einstufung potentieller KAK
base saturationBasensättigung2426Einstufung Basensättigung und Zuordnung von pH-Wert-Bereichen
peat typeTorfart2527Botanische Gliederung von Torfen
substance volumeSubstanzvolumen2628Einstufung Substanzanteils von Moorböden
slope gradient levelHangneigungsstufe2729Einstufung Hangneigung
+
+ +
+ +The Guidelines for Soil Assessment [[2]](https://www.hlnug.de/fileadmin/dokumente/boden/Gefaehrdung/NAG/Arbeitsanleitung_neues_Feldschaetzungsbuch_mit_Abkuerzungsverzeichnis.pdf) +includes code lists for several soil parameters (Table 13). Symbols and class definitions of these code lists deviate +conspicuously from other national standards (KA5 [[1]](https://www.schweizerbart.de/publications/detail/isbn/9783510959204/Bodenkundliche_Kartieranleitung_5_Aufl) +or DIN 4220) with the exception of the code lists for horizon symbols, which is taken from the German Soil Survey +Guideline, 4th edition (KA4). + +
+ +### Table 13 +_Parameters for field soil description provided with code lists in the Guidelines for Soil Assessment_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +< + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Parameter (EN)
_
+Parameter (D)
________
pagesection
_
+Code list name
____________________
soil moistureBodenfeuchtigkeit81.4Feuchtigkeitszustand des Bodens
position in reliefLage im Relief92.1Lage des Grablochs
expositionExposition92.2Hangrichtung des Grablochs
special cultivation type, characteristic water conditions Sonderkulturarten und Besonderheiten der Wasserverhältnisse102.8Erläuterungen zum Kataster
cultivation typeKulturart112.9Kulturart
soil textureBodenart112.10.1

Bodenarten nach dem Schätzungsrahmen

+

Misch- und Übergangsbodenarten bei Acker- und Grünland

+

Schichtbodenarten bei Mineralboden

+Schichtwechsel Mineral-/Moorboden bei Acker- und Grünland +
geo- genesisGeologische Entstehung122.10.3Entstehungsart
particularitiesBesonderheiten132.12Besonderheiten, Abrechnungen (%)
remarksBemerkungen152.26Bemerkungen
humus contentHumusgehalt183.2.1Humus
carbonate contentKalkgehalt183.2.2Kalk
soil colorBodenfarbe183.2.3Farbe
iron compounds Eisenverbindungen 193.2.4Eisen
soil moistureBodenfeuchte203.2.5Feuchte
further soil featuressonstige Bodeneigenschaften203.2.6Sonstiges
main soil texture - fine soilHauptbodenarten - Feinboden213.2.7Hauptbodenarten - Feinboden
coarse fragmentsHauptbodenarten - Grobboden--Hauptbodenarten - Grobboden (Bodenskelett)
soil type - weathering soil Bodenart - Verwitterungsböden--Verwitterungsböden
special soil texturesbesondere Bodenarten--besondere Bodenarten
subordinate soil textures - fine soilNebenbodenarten - Feinboden--Nebenbodenarten - Feinboden
subordinate - coarse fragmentsNebenbodenarten - Grobboden--Nebenbodenarten - Grobboden
additional information on soil textureErgänzende Angaben zur Bodenart--Ergänzende Angaben zur Bodenart
soil systematic unit - terrestrial soilsBodensystematische Einheit - terrestrische Böden264.1.1Abteilung der terrestrischen Böden
soil systematic unit – semi-terrestrial soilsBodensystematische Einheit - semiterrestrische Böden294.1.2Abteilung der semiterrestrischen Böden
soil systematic unit – bogs and fensBodensystematische Einheit - Moore314.1.4Abteilung der Moore
horizon symbols - organic horizonsHorizontsymbole - organische Horizonte334.2.1Organische Horizonte
horizon symbols - mineral horizonsHorizontsymbole - mineralische Horizonte344.2.2Mineralische Horizonte
+
+ +
+ +The FAO Guidelines for soil description contain code lists for numerous soil parameters (Table 14). +In many cases several code lists are given for a distinct parameter describing different aspects of the parameter. + +
+ +### Table 14 +_Parameters provided with code lists in FAO Guidelines for soil description (4th edition, 2006) [[3]](https://www.fao.org/3/a0800e/a0800e00.htm)_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ParameterpageTable
_
Code list name
___________________________
weather

9

9

2

2

Codes for weather conditions +[4]

+Former weather conditions +[1]
soil climate103Soil temperature and moisture regime codes
landform (relief)

11

11

4

5

Hierarchy of major landforms

+Subdivisions for complex landforms +
slope form126Classification of slope forms
slope gradient 127Slope gradient classes
land use148Land use classification
cultivation159Crop codes
anthropogenic influence1510Recommended codes for human influence
vegetation1611Vegetation classification
parent material1812Hierarchy of lithology
age of land surface1913Provisional coding for age of land surface
rock outcrops2114Recommended classification of rock outcrops
coarse surface fragments2215Classification of coarse surface fragments
erosion

22

22

22

23

16

17

18

19

Classification of erosion, by category

+

Classification of total area affected by erosion /deposition

+

Classification of erosion, by degree

+Classification of erosion, by activity
surface sealing2320Classification of attributes of surface sealing
surface cracks2421Classification of surface cracks
salt at surface2422Classification of salt characteristics
bleached sand at surface2423Classification of bleached sand characteristics
horizon boundary2524Classification of horizon boundaries, by distinctness and topography
soil type (fine soils)2825Key to the soil textural classes
coarse soil fraction and artefacts

29

30

31

31

26

27

28

29

Abundance of rock fragments and artefacts, by volume

+

Classification of rock fragments and artefacts

+

Classification of shape of rock fragments

+Classification of weathering of coarse fragments +
nature of rock fragments3130Codes for primary mineral fragments
degree of decomposition (peat)3231Field estimation and coding of the degree of decomposition and humification of peat
mottles

35

35

36

36

32

33

34

35

Classification of the abundance of mottles

+

Classification of the size of mottles

+

Classification of the contrast of mottles

+Classification of boundary between mottle and matrix
soil redox potential3636Redoximorphic soil characteristics and their relation to rH values and soil processes
reductimorphic properties3737Reductimorphic color pattern and occurrence of Fe compounds
carbonate content

38

38

38

39

Classification of carbonate reaction in the soil matrix

+Classification of forms of secondary carbonates
gypsum content

39

39

30

41

Classification of gypsum content

+Classification of forms of secondary gypsum
salt content4042Classification of salt content of soil
field soil pH value4144Classification of pH value
soil odor4245Classification of soil odor
organic matter content4346Estimation of OM-content based on Munsell soil color
soil structure

45

46

46

47

47

47

47

48

49

50

51

52

Classification of structure of pedal soil materials

+

Classification of types of soil structure

+

Codes for types of soil structure

+

Size classes for soil structure types

+

Combined size classes for soil structure types

+Combinations of soil structures
consistence

48

49

49

49

53

54

55

56

Consistence of soil mass when dry

+

Consistence of soil mass when moist

+

Classification of soil stickiness

+Classification of soil plasticity
soil-water status5057Classification of moisture status of soil
bulk density

51

52

58

59

Field estimation of bulk density for mineral soils

+Field estimation of volume of solids and bulk density of peat soils
porosity

52

53

53

53

60

61

62

63

Classification of porosity

+

Classification of voids

+

Classification of diameter of voids

+Classification of abundance of pores
coatings

55

55

55

56

56

64

65

66

67

68

Classification of abundance of coatings

+

Classification of the contrast of coatings

+

Classification of the nature of coatings

+

Classification of the form of coatings

+Classification of the location of coatings, clay accumulation
cementation and compaction

56

56

57

57

69

70

71

72

Classification of the continuity of cementation/compaction

+

Classification of the fabric of cemented/compacted layer

+

Classification of the nature of cementation/compaction

+Classification of the degree of cementation/compaction +
mineral concentrations

58

58

58

58

59

59

73

74

75

76

77

78

Classification of the abundance of mineral concentrations

+

Classification of the kinds of mineral concentrations

+

Classification of the size and shape of mineral concentration

+

Classification of the hardness of mineral concentrations

+

Examples of the nature of mineral concentrations

+Color names of mineral concentrations
root diameter6079Classification of the diameter of roots
root density6080Classification of the abundance of roots
biological activity

60

60

81

82

Classification of the abundance of biological activity

+Examples of biological features
artefacts6383Classification of kinds of artefacts
anthropogenic deposits6484Determination table and codes for human-made deposits
horizon symbols7285Subordinate characteristics within master horizons
+
+ +
+ +### Table 15 +_Parameters provided with code lists in ISO 25177:2019, Soil description in the field_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Parameter (EN)Parameter (D)p.Code List-No.
_
+Code list name
__________
precipitationNiederschlag7-Vorangegangene Niederschlagsereignisse
land useFlächennutzung8-Flächennutzung (ausführliche Felduntersuchung) auf Plottebene
nature of the waterGrundwasserbeschaffenheit11-Beschaffenheit des Wassers
percentage of rock outcrops or non-natural materialsFlächenanteil von Gesteins-aufschlüssen oder „nicht natürlichen“ Oberflächen11-Prozentualer Anteil von Gesteins-aufschlüssen oder „nicht natürlichen“ Oberflächen
erosion and soil accumulationGegenwärtige Erosion und Akkumulation12-Anzeichen von Erosion
abundance of mottlesFlächenanteil von Flecken14-Häufigkeit von Flecken
organic matter contentGehalt an org. Substanz15-Geschätzter Gehalt org. Substanz
abundance of coarse elementsGrobbodenanteil15-Grobboden, Auftreten (als Volumenanteil in Prozent)
maximum grain size of coarse elementsMaximale Korngröße Grobboden16-Max. Korngröße häufig auftretender Bestandteile des Grobbodens
carbonate contentCarbonatgehalt16-Intensität des Aufbrausens
carbonate distributionCarbonatverteilung17-Auftreten des Aufbrausens
soil structureBodengefüge

17

39

-

Fig. F.1

Hauptkategorien des Bodengefüges

+Bodengefügeformen
compactnessFestigkeit18-Festigkeit
porosityPorenanteil18-Geschätzte Gesamtporosität
root diameterWurzeldurchmesser18-Dicke (Durchmesser) der am häufigsten auftretenden Wurzeln
root densityDurchwurzelungsintensität19-Häufigkeit von Wurzeln
density of worm channelsWurmröhrendichte19-Dichte von Wurmgängen
lower horizon boundary formHorizontuntergrenze Form19-Kontur der unteren Horizontbegrenzung
Reference Soil GroupsReferenzbodengruppen21Tab. B.1Referenzbodengruppen der WRB [5] +(FAO, ISRIC und ISSS, 2006)
fine earth fractionsFeinbodenfraktionen35Tab. D.1Richtwerte für die Einteilung mineralischer Böden mit Korngrößenbereichen
+
+ +
+ +### Table 16 +_[INSPIRE](https://inspire.ec.europa.eu/codelist) Code List register for soil parameter (selected)_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Content/DefinitionName
master horizon symbolsFAO Horizon Master Value
subordinate horizon symbolFAO Horizon Subordinate Value
connotes the master horizon symbol of the lowest of 2 or 3 (prime, double prime) +horizons with identical Arabic-numeral prefixes & letter combinationsFAO Prime Value
values indicating the placement of the Qualifier with regard to the WRB reference +soil group (RSG).WRB Qualifier Place Value
possible qualifiers of the WRB for Soil ResourcesWRB Qualifier Value
possible RSG (i.e. first level of classification of the WRB for Soil Resources). RSG are distinguished +by the presence/ absence of specific diagnostic horizons, properties and/or materialsWRB Reference Soil Group Value
possible specifiersWRB Specifier Value
gives an idea whether current non-pedogenic processes affect the soil or notLayer Genesis Process State Value
layer classificationLayer Type Value
properties that can be observed to characterize the profile elementProfile Element Parameter Name Value
properties that can be derived from soil dataSoil Derived Object Parameter Name Value
status of contaminating activityContaminating Activity Presence Value
possible values indicating reasons for conducting a surveySoil Investigation Purpose Value
terms specifying on what plot observation is madeSoil Plot Type Value
properties observations to characterize soil profilesSoil Profile Parameter Name Value
properties observations to characterize soil sitesSoil Site Parameter Name Value
trigger to have site or future investigationsInvestigation Trigger Value
status risk assessmentRisk Assessment Stage Value
entities exposed to pollutants at the site.Risk Receptor Value
indicates restrictions on the site as a consequence of the current situationSoil Contamination Specialized Zone Type Code
+
+ +
+ +### Important code lists for crops, breeding, agriculture, land use, and measures + +- The **International Code Council** ([ICC](https://www.iccsafe.org)) develops affordable code lists for global markets, agriculture and science. + +- Within its World Program for the Census of Agriculture 2010, the **FAO** published an “Alphabetic List of Crops with +Botanical Names and Crop Codes” [[6]](https://www.fao.org/3/a0135e/a0135e00.htm). + +- The [Indicative Crop Classification](https://www.fao.org/fileadmin/templates/ess/documents/world_census_of_agriculture/appendix4_r7.pdf) +(**ICC**-FAO) lists crop codes. The 2-4 digits codes do not differ between varieties and sowing dates (e.g. winter wheat). +In 2017 a new version 1.1 was published which is now closely based on the Central Product Classification (CPC) [[7]](https://digitallibrary.un.org/record/3900378). + +- The [NCDI](https://www.ncbi.nlm.nih.gov/taxonomy) provides an extensive list of codes, besides many others, for field crops + +- The Central Product Classification (CPC)[[7]](https://digitallibrary.un.org/record/3900378) Version 2.1 was published by the United Nations (2015) and classifies goods +and services such as crop products. + +- A code list for crops is provided by the **Clemson University** (2008) [[8]](http://www.clemson.edu/agsrvlb/CropCodesWeb.htm). + +- The Genetic Resources Information System ([GRIS](http://wheatpedigree.net)) provides breeding and variety information and codes for wheat and +triticale (09:2018: 171,000 varieties) + +- The Agronomy Ontology ([AgrO](https://bigdata.cgiar.org/resources/agronomy-ontology/)) is built by [CGIAR](https://www.cgiar.org) and describes agronomic practices, techniques and variables used in +agronomic experiments. It provides codes for tillage practices. + +- Codes for tractors and other agricultural machineries are provided by the Harmonized Commodity Description and +Coding System ([HS-Codes](https://www.foreign-trade.com/reference/hscode.htm)) which was developed by the World Customs Organization (WCO). + +- In Germany crop types and varieties are registered, described and coded by the Federal Plant Variety Office +(**BSA**, Bundessortenamt) [[9]](https://www.bundessortenamt.de/bsa/media/Files/BSL/bsl_getreide_2021.pdf). It provides descriptive variety lists e.g. for cereals, maize, oil and fiber plants. + +- Within the extended **BBCH-scale** phenological development stages are described and coded for all kinds of agricultural +plants and products [[10]](https://www.openagrar.de/receive/openagrar_mods_00067370). + +- Based on the EU-regulation [1305/2013](https://eur-lex.europa.eu/legal-content/EN/TXT/PDF/?uri=CELEX:32013R1305&from=DE) +(in Germany “InVeKoS”) code lists on different crop types and culture codes, +3 digits were established (e.g., Flächennutzungsnachweis, FNN). + +- In the United States, fertilizers are listed in the [UFTRS](http://agriculture.ks.gov/docs/default-source/pest---fert-uftrs/pf-uftrs-codes.pdf?sfvrsn=0) **Code List** (Uniform Fertilizer Tonnage Reporting System, 3 digits). + +- The Federal Office of Consumer Protection and Food Security ([BVL](http://biosicherheit-bch.de/SharedDocs/Downloads/04_Pflanzenschutzmittel/psm_uebersichtsliste.pdf?__blob=publicationFile&v=33)) +provides code lists on land use (1 letter), plant protection (active substances, 4 digits), function (1 letter), +authorization holders (3-4 characters), and type of formulation (2 letters). + +- The **EPPO-Code** (European and Mediterranean Plant Protection Organization) contains plants, pests and pathogens in the +frame of agriculture and crop protection. + +- Land use classes are coded in the CORINE Land Cover ([CLC](https://www.eea.europa.eu/publications/COR0-landcover)) +including a 3-level nomenclature. Agricultural areas start with number “2”. + +- The code system **UCUM** (Unified Code for Units of Measure) includes units of measures being contemporarily used in +international science and engineering. UCUM is based on EN ISO 80000 and is used e.g. for electronical data interchange protocols. + + +### Important code lists for data management and metadata + +- There are 33 code lists in **ISO 19115-1ff** (including references to other ISO standards, e.g. language code- ISO 639-2). +Code lists of **EN ISO 19115-1:2003, 19115-2:2010** and **19119:2016** are used in INSPIRE and GDI-DE metadata schema as data type +for several metadata elements, e.g. CI_RoleCode, MD_CharacterSetCode, MD_ClassificationCode, MD_keywordTypeCode, MD_RestrictionCode, +and MD_TopicCategoryCode. + +- While the standard **EN ISO 19108:2005** deals with geographic information and a temporal schema, **ISO 8601:2019** contains +data elements and interchange formats and represents date and times. Both have been implemented for INSPIRE. + +- RFC 4646: tags for identifying languages, RFC 3986, Uniform Resource Identifier, TGN (Getty Thesaurus of Geographic Names) +for coverage and DCMI Type Vocabulary [DCIM-TYPE], to describe nature or genre of the resource have been used in Dublin Core. + +- The INSPIRE Metadata Regulation 1205/2008/EC [[11]](https://inspire.ec.europa.eu/documents/Metadata/INSPIRE_MD_IR_and_ISO_v1_2_20100616.pdf) +mandate the presence of at least one keyword. This can be associated with a controlled vocabulary which in ISO standard is referred to as “thesaurus”. + +
+ +### Table 17 +_Further relevant code lists and glossaries_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
FeaturePublisher/Standard
air quality, exchange of dataISO 7168-1:1999

coordinate reference systems

+culture codes, crop types

EPSG-Codes

+InVeKoS-FNN (Flächen- und Nutzungsnachweis)
date and timeISO 8601:2019
languages, language namesISO 639-1:2002 and ISO 639-2:1998
+DIN 2335:2016-08
SI unitsEN ISO 80000-1ff series
soil data formatsISO 28258:2013; INSPIRE DS Soil
sprayersISO 10627-2:1996 [withdrawn]
vegetation survey (homogeneity, species, abundance)Braun-Blanquet-Scale (Relevé method)
+
+ +
+ +### Table 18 +_Glossaries and vocabularies_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
FeaturePublisher/Standard
access panels in market, opinion, social researchISO 20252:2019
castors and wheelsEN 12526:1998
earth-moving machineryISO 6165:2022
equipment for crop protectionISO/DIS 5681:2020
equipment of harvestingISO 6689:2021
forage harvesterISO 8909-1:2021
grain speciesISO 5527:2015
market, opinion and social researchISO 20252:2019
meteorology (data aggregation)VDI 3786-1:2013
quality managementEN ISO 9000:2015
soil qualityISO 11074:2015/Amd 1:2020
soil tillage, ploughingISO 8910:1993
soil waterISO 15709:2002
statistics (terms, symbols)ISO 3534-1:2006
tractors and (self-propelled) machinesISO 14269-1:1997
tractors - symbols for operatorsISO 3767-2:2016
water qualityISO 6107-1:2021
+
+ +
+ +:::bonares_reference + +### References + +[1] Boden, Ad-hoc-AG (2005). Bodenkundliche Kartieranleitung (German Soil Survey Guideline). Hannover. + +[2] Bundesministerium der Finanzen (1996): Arbeitsanleitung neues Feldschätzungsbuch: Bodenschätzung. Berlin. + +[3] FAO (2006). Food and Agriculture Organization of the United Nations. Guidelines for soil description. 4th edition. Rome. + +[4]Schoeneberger, P.J., Wysocki, D.A., Benham, E.C (2012). Field Book for Describing and Sampling Soils. Lincoln, NE; Reprint 2021 + +[5] WRB, IUSS Working Group (2014). World reference base for soil resources 2014: International soil classification system +for naming soils and creating legends for soil maps: Update 2015. World Soil Resources Reports No. 106: 203. + +[6] FAO (2005). A system of integrated agricultural censuses and surveys. Volume 1: World Programme for the Census of Agriculture 2010. Rome. + +[7] UN (2015). Central product classification (CPC) version 2.1. New York. + +[8] University, Clemson (2008). Computer Crop Codes for Soil Samples (http://www.clemson.edu/agsrvlb/CropCodesWeb.htm). + +[9] Bundessortenamt (2021). Beschreibende Sortenliste. Getreide, Mais, Öl- und Fasepflanzen, Leguminosen, Rüben, Zwischenfrüchte. Hannover. + +[10] Hack, H; Bleiholder, H.; Buhr, L.; Meier, U.; Schnock-Fricke, U.; Weber, E.; Weber, E. (1992). +Einheitliche Codierung der phaenologischen Entwicklungsstadien mono- und diktyler Planzen - Erweiterte BBCH-Skala, +Allgemein. Narichtenbl. Deut. Pflanzenschutzd 44: 265-270. + +[11] JRC (2007, update 2013). "INSPIRE Metadata Implementing Rules: Technical Guidelines based on EN ISO 19115 and +EN ISO 19119." from http://inspire.ec.europa.eu/documents/Metadata/INSPIRE_MD_IR_and_ISO_v1_2_20100616.pdf. + +::: diff --git a/src/help/credits.md b/src/help/credits.md new file mode 100644 index 0000000..373a27e --- /dev/null +++ b/src/help/credits.md @@ -0,0 +1,14 @@ +--- +label: Credits +order: 5 +--- +# Credits + +This online version of the Standards Report was implemented and designed by Josua Kaden, HU Berlin. + +Used Software: + +PyCharm 2022.2.3 (Community Edition)
+VM: OpenJDK 64-Bit Server VM by JetBrains s.r.o.
+ +and ReType diff --git a/src/help/index.md b/src/help/index.md new file mode 100644 index 0000000..a953ab0 --- /dev/null +++ b/src/help/index.md @@ -0,0 +1,12 @@ +--- +label: Appendix +icon: info +expanded: true +order: 100 +--- + +# Appendix + +[!ref](/appendix/recommended_standards.md) +[!ref](/appendix/code_lists.md) +[!ref](/appendix/web_links.md) \ No newline at end of file diff --git a/src/help/recommended_standards.md b/src/help/recommended_standards.md new file mode 100644 index 0000000..7aaec31 --- /dev/null +++ b/src/help/recommended_standards.md @@ -0,0 +1,227 @@ +--- +label: Recommended standards +order: 30 +--- + +# Recommended standards + +_Table 9: Overview of highly recommended standards (alphabetical order)_ + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ContentStandard
Agricultural activities (Fertilization, Manure)EU Regulation 2003/2003
+VDLUFA Method Books +[1]
Agricultural activities (Plant protection)European Plant Protection Organization +(EPPO)
Agricultural activities (Rating)Boniturmethoden, Bundessortenamt (2000) +[2]
+DIN 19707:2004 [withdrawn]
Agricultural activities (Soil management)DIN 18916:2016
+GAP
+Operation Planning Agriculture (KTBL, 2014) +[3]
Agricultural activities (Sustainable management)detailed list for different aspects see Table 5
Agricultural tools and machineriesdetailed list for specific tools see Table 4
Crops (Varieties)Bundessortenamt (2021) +[4]
Crops (Mass, Components)EN ISO 520:2010
+ISO 7971-1ff series
+DIN EN 15587:2019
Data conventions (General)detailed list for divers data conventions see Table 6
Data exchangeUML
+XML
Data exchange (Agricultural data)AgroXML
+ISO-XML (ISO 11783-1:2017ff)
Data exchange (Geo-data)OGC standards (GML, KML, WaterML, SOS,…)
+GeoSciML
Data exchange (Metadata)XMI
Data publicationDataCite, DOI
Data qualityEN ISO 19157:2013
Data quality (Repository, Seal)Core Trust Seal
Data quality (Statistics)ISO 16269 series
+DIN ISO 11843-1ff series
+ISO 3534-1/-2
+DIN 66270:1998 [withdrawn]
Digital archivesDIN 31644:2012-04
Geo-data servicesall OGC standards on web services (WMS, WFS, CSW, WCS, …)
Land use classificationCORINE Land Cover

+Licenses		ATKIS
+Creative Commons (CC)
MetadataINSPIRE (EU)
+DataCite
MeteorologyDIN 1319-1ff series
+EN ISO 20988:2007
+ISO 9169:2006
Ontology (Tools and Languages)SKOS
+RDF
+ISO/IEC 13250-2:2006
+OWL
+VocBench
Soil analysis (Laboratory)ISO 11464:2006
+ DIN ISO 11843-1ff
+ Methods of Soil Analysis [5]
+ Handbook of Soil Investigations [6]
+ VDLUFA Method Book (2016) [1]
+ detailed list for specific soil parameters see Tables 2 and 3
Soil description and classificationKA5, German Soil Survey Guidelines +[7]
+ IUSS WRB [8]
Soil description and classification (Condition)DIN 19706:2013
+DIN 19707:2004 [withdrawn]
+DIN 19708:2022
Soil description and classification (Conformity check)Conformity key for KA5 (BGR)
Soil description and classification (Transformation)Transformation and derivation tools (BGR)
Soil samplingISO 18400-1ff series
Soil sampling depthsGlobalSoilMap
ThesauriISO 25964-1:2011
+AGROVOC
+GEMET
Vegetation (Minimum information)MIAPPE
Vegetation (Phenology stages)BBCH scale
Vegetation (Survey)Braun-Blanquet-Scale
Vocabularies (Portal)AgroPortal
+GODAN Agrisemantics Map of Standards
+
+ +:::bonares_reference + +### References + +[1] VDLUFA (2016). Verband Deutscher Landwirtschaftlicher Untersuchungs- und Forschungsanstalten. Method Books. + +[2] Bundessortenamt (2000). Richtlinien für die Durchführung von landwirtschaftlichen Wertprüfungen und Sortenversuchen. Hannover. + +[3] KTBL (2014). Betriebsplanung 2014/2015. Kuratorium für Technik und Bauwesen in der Landwirtschaft e. V. Darmstadt. + +[4] Bundessortenamt (2021). Beschreibende Sortenliste. Getreide, Mais, Öl- und Fasepflanzen, Leguminosen, Rüben, Zwischenfrüchte. Hannover. + +[5] SSSA (2017). Methods of Soil Analysis (Part 1-5). + +[6] Blume, Hans-Peter, Berthold Deller, Klaus Furtmann, Rainer Horn, Reimar Leschber, Andreas Paetz and +Berndt-Michael Wilke (2016). Handbuch der Bodenuntersuchung: Terminologie, Verfahrensvorschriften und Datenblätter ; +physikalische, chemische, biologische Untersuchungsverfahren ; gesetzliche Regelwerke. Berlin; Wien u.a., Beuth + +[7] Boden, Ad-hoc-AG (2005). Bodenkundliche Kartieranleitung (German Soil Survey Guideline). Hannover. + +[8] WRB, IUSS Working Group (2014). World reference base for soil resources 2014: International soil classification system for naming soils and creating legends for soil maps: Update 2015. World Soil Resources Reports No. 106: 203. + +::: \ No newline at end of file diff --git a/src/html_example.md b/src/html_example.md new file mode 100644 index 0000000..68c784f --- /dev/null +++ b/src/html_example.md @@ -0,0 +1,144 @@ +--- +label: Agricultural Tools and Machineries +order: 50 +--- + +# Agricultural Tools and Machineries + +Standards for tractors and machineries in agriculture are developed by the ISO/TC 23. Numerous tillage +tools for sowing preparation and soil loosening equipment are defined in rulebooks and standards. + +
+ +_Overview of existing standards_ + +In Table 4 the most important national and international standards on agricultural tools and +machineries are compiled. + +
+ +_Table 4: Recommended standards for tillage tools and agricultural machines_ ![](/static/img/two_star.png) + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
ContentStandard
Tools and Equipment
Cultivator Blades (fixing dimensions) ISO 8945:1989
Cultivator Tines and Shovels (fixing dimensions) ISO 5680:1979
Disks ISO 5679:1979
Harvester DIN 11389:1988
Hoe blades ISO 4197:1989
Pesticides and herbicides
+
granulated, equipment
+spraying
ISO 8524:1984
+ISO 5682-1:1996
Plough ISO 8910:1993
S-tines ISO 8947:1993
ISO 5678:1993
Seed drills ISO 7256 (1-2)
Shallow tillage (dimensions, attachment points) ISO 6880:1983
Sowing and planting (equipment) ISO 17962:2015
ISO 4002 (1-2)
Sprayers ISO 10627-2:1996
Turf and seeding DIN 18917:2002
Machines
Machines, self-propelled - assessment of stability ISO 16231:2013 (1-2)
Machines, safety
-6 sprayer
-9 seed drills
-10 rotary tedders
-12 rotary disc		 ISO 4254 (1-12)
Machines operations VDI 6101:2014
Tractors, mounted rotary cultivators, motor hoes drive wheel EN 709:1997
Tractors, rear-mounted power take-off types ISO 500:2014-1
Tractors, remote control hydr. cylinders for trailed implements ISO 2057:1981
Tractors, connection via three-point linkage ISO 2332:2009 ISO 730:2009
Tractors, operators manual ISO 3600:2022
Tractors, safety ISO 26322-1:2008
Tractor-mounted sensor interface – specifications ISO 11786:1995
Tractors, track widths ISO 4004:1983
Tyres (general): definition of terms ISO 4223-1:2017
+
Tyres (agricultural):
+
dimensions (-1) load ratings (-2)
+dimensions and designation
+dimensions, load ratings and reference speeds +
+		 +
ISO/DIS 4251:2019
+ISO 7867-1:2005
+ISO/DIS 8664:2018
+
Wheels and tyres, radial construction
+
- measuring conditions
DIN 7807:1995
+DIN 70020-5:1986
Wheels and castors, test methods EN 12527:1998
Weigh-in-Motion of road vehicles DIN 8113:2009
Working width (sawing, planting, fertilizing) ISO 6720:1989
+
+ diff --git a/src/index.md b/src/index.md new file mode 100644 index 0000000..7090638 --- /dev/null +++ b/src/index.md @@ -0,0 +1,92 @@ +--- +label: Handbook for BonaRes Repository +icon: home +--- + +# Handbook for BonaRes Repository + +![](/static/img/bonares-repository-logo.png) + +**Authors**: Carsten Hoffmann, Sina Schulz, Einar Eberhardt, Meike Grosse, Susanne Stein, Xenia Specka, Nikolai Svoboda, +Uwe Heinrich + +This living document has been produced in the framework of the German research +initiative [BonaRes](https://www.bonares.de) (Soil as a sustainable resource for the bio-economy). The third +version is published in the [BonaRes Series, 2020](https://tools.bonares.de/doi/doc/25/) with more than 600 standards, +as relevant for the soil- and agricultural research data management. As the report is a living document, the report is +transferred to this web application to compile, discuss and recommend the latest state of data standards for +soil and agricultural research. + +It is grouped based on three major data life stages and might act as a helpful reference +work for the soil-agricultural research data community. + +1. [Submit Research Data](/submit_research_data) +2. [Metadata](/metadata) +3. [Creation of templates](/creation_of_templates) +4. [Help](/help) +5. [Glossary](/gloassary) +6. [German Translation](/german_translation) + +## Motivation + +The use of open and widely accepted standards is the basis for modern (FAIR, [[1]](https://doi.org/10.1038/sdata.2016.18)) research data management. In this context, task of +this report is to describe, compare, review and recommend standards for the whole data life and to assist soil- and +agricultural scientists to store their research data into a data infrastructure to make them findable and accessible in +the long-term for any reuse. Missing and competitive national and international standards and potential conflicts are +stated and, based on internal and external expert knowledge, outstanding standards are highlighted and summarized to +recommendations: + +!!!light Recommendation explanation +![](/static/img/two_star.png) Favored = highly recommended for application
+![](/static/img/one_star.png) OK = acceptable alternative but maybe requires later transformation +!!! + +In the [Appendix](appendix/index.md) the highly recommended standards as well as many code lists, glossaries and web +links are listed in tables + +## The BonaRes Repository + +In July 2017, the BonaRes Centre launched +the [BonaRes Repository](https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en) for soil and +agricultural research data. Beside data from national research projects, the repository is open for other soil-related +data, e.g. from agricultural long-term field experiments (LTE). The BonaRes Centre provides DOI, easy access and +long-term availability for all uploaded research data. According to +the Berlin Declaration on Open Access (2003)[[2]](https://openaccess.mpg.de/Berlin-Declaration) and the initiative +“Digitale Information”[[3]](http://www.allianzinitiative.de/en/) , metadata and research data will not be subject to any restrictions +on reuse. Metadata are always available and, after a limited embargo-time, also research data are provided accessible +for the international research community. Further information is given in the BonaRes Data +Guideline [[4]](http://doi.org/10.20387/BonaRes-E1AZ-ETD7). + +[!embed](https://youtu.be/wo0Rv4YPjCo) + +According to the [GitHub FAIRMetrics](https://github.com/FAIRMetrics/Metrics), +the [BonaRes Repository](https://maps.bonares.de/mapapps/resources/apps/bonares/index.html?lang=en) serves all relevant +elements of FAIR data principles (Findable, Accessible, Interoperable, Reusable, see [[1]](https://doi.org/10.1038/sdata.2016.18)), and +additionally, provides legal security for sensitive data and facilitate data up- and downloads. To meet these demands +and to enhance research data reusability (FAIR Principle R 1.3)[[1]](https://doi.org/10.1038/sdata.2016.18), the use of relevant open community standards and data +documentation during data life is necessary. Such standards concern, beside others, the classification and description +of soils, field- and lab methods, agricultural technology, plant varieties, fertilizers, farming and agricultural +business, data quality control, ontologies, data formats, data storage and -archiving, and metadata management. All +standards which are recommended within this document are supported by the BonaRes repository. Research data which were +collected under standardized conditions, described with coherent metadata, proofed by quality tests, and stored in the +repository, will be visible, accessible and citable for any data reuse (e.g. modelling), exchange or review. + +In the long term it is planned to consolidate the BonaRes Repository into international infrastructures for soil and +agricultural research data. This requires data interoperability by internationally accepted and applied standards. +Transformation tools may help to translate data from national to international valid systems and formats. + +:::bonares_reference + +## References + +[1] Wilkinson, M., Dumontier, M., Aalbersberg, I. et al. The FAIR Guiding Principles for scientific data management and +stewardship. Sci Data 3, 160018 (2016). DOI: [10.1038/sdata.2016.18](https://doi.org/10.1038/sdata.2016.18) + +[2] Berlin Declaration on Open Access (2003). https://openaccess.mpg.de/Berliner-Erklaerung. + +[3] Alliance of Science Organizations in Germany (2013). http://www.allianzinitiative.de/en/. + +[4] Svoboda, N. and U. Heinrich (2017). The BonaRes Data Guideline. BonaRes Data Centre. http://doi.org/10.20387/BonaRes-E1AZ-ETD7. + +::: + diff --git a/src/markdown_example.md b/src/markdown_example.md new file mode 100644 index 0000000..970892d --- /dev/null +++ b/src/markdown_example.md @@ -0,0 +1,37 @@ + + +You can use the [editor on GitHub](https://github.com/zalf-rdm/zalf-rdm.github.io/edit/master/docs/index.md) to maintain and preview the content for your website in Markdown files. + +Whenever you commit to this repository, GitHub Pages will run [Jekyll](https://jekyllrb.com/) to rebuild the pages in your site, from the content in your Markdown files. + +### Markdown + +Markdown is a lightweight and easy-to-use syntax for styling your writing. It includes conventions for + +```markdown +Syntax highlighted code block + +# Header 1 +## Header 2 +### Header 3 + +- Bulleted +- List + +1. Numbered +2. List + +**Bold** and _Italic_ and `Code` text + +[Link](url) and ![Image](src) +``` + +For more details see [Basic writing and formatting syntax](https://docs.github.com/en/github/writing-on-github/getting-started-with-writing-and-formatting-on-github/basic-writing-and-formatting-syntax). + +### Jekyll Themes + +Your Pages site will use the layout and styles from the Jekyll theme you have selected in your [repository settings](https://github.com/zalf-rdm/zalf-rdm.github.io/settings/pages). The name of this theme is saved in the Jekyll `_config.yml` configuration file. + +### Support or Contact + +Having trouble with Pages? Check out our [documentation](https://docs.github.com/categories/github-pages-basics/) or [contact support](https://support.github.com/contact) and we’ll help you sort it out. diff --git a/src/metadata/bonares.css b/src/metadata/bonares.css new file mode 100644 index 0000000..5f3ea2a --- /dev/null +++ b/src/metadata/bonares.css @@ -0,0 +1,26 @@ +a { + color: #1679a4 !important; +} + +.bonares_reference { + text-align: left; + color: #222222; + border-radius: 5px; + background-color: #eeeeee; + /* border: 1px solid #1956AF;*/ + padding: 20px; + margin-bottom: 20px; + margin-top: 40px; +} + +.bonares_reference h2 { + font-size: 1.3em; + color: #222222; + +} + +.bonares_reference p { + font-size: 0.95em; + color: #222222; + margin-bottom: 1.3rem !important; +} diff --git a/static/img/bonares-repository-logo.png b/src/metadata/img/bonares-repository-logo.png similarity index 100% rename from static/img/bonares-repository-logo.png rename to src/metadata/img/bonares-repository-logo.png diff --git a/static/img/glossary.svg b/src/metadata/img/glossary.svg similarity index 100% rename from static/img/glossary.svg rename to src/metadata/img/glossary.svg diff --git a/static/img/page-with-header.png b/src/metadata/img/page-with-header.png similarity index 100% rename from static/img/page-with-header.png rename to src/metadata/img/page-with-header.png diff --git a/static/img/thumbs.db b/src/metadata/img/thumbs.db similarity index 100% rename from static/img/thumbs.db rename to src/metadata/img/thumbs.db diff --git a/static/img/translation-icon.svg b/src/metadata/img/translation-icon.svg similarity index 100% rename from static/img/translation-icon.svg rename to src/metadata/img/translation-icon.svg diff --git a/static/img/zalf_logo.png b/src/metadata/img/zalf_logo.png similarity index 100% rename from static/img/zalf_logo.png rename to src/metadata/img/zalf_logo.png diff --git a/static/img/zalf_logo.svg b/src/metadata/img/zalf_logo.svg similarity index 100% rename from static/img/zalf_logo.svg rename to src/metadata/img/zalf_logo.svg diff --git a/static/style.css b/src/metadata/style.css similarity index 100% rename from static/style.css rename to src/metadata/style.css diff --git a/src/static/img/bonares_repository_logo.png b/src/static/img/bonares_repository_logo.png new file mode 100644 index 0000000..55fdbc7 Binary files /dev/null and b/src/static/img/bonares_repository_logo.png differ diff --git a/src/static/img/glossary.svg b/src/static/img/glossary.svg new file mode 100644 index 0000000..540b7fc --- /dev/null +++ b/src/static/img/glossary.svg @@ -0,0 +1,108 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/src/static/img/page_with_header.png b/src/static/img/page_with_header.png new file mode 100644 index 0000000..7672369 Binary files /dev/null and b/src/static/img/page_with_header.png differ diff --git a/src/static/img/translation_icon.svg b/src/static/img/translation_icon.svg new file mode 100644 index 0000000..627853c --- /dev/null +++ b/src/static/img/translation_icon.svg @@ -0,0 +1,23 @@ + + + + + \ No newline at end of file diff --git a/src/static/img/zalf_logo.png b/src/static/img/zalf_logo.png new file mode 100644 index 0000000..a3615cf Binary files /dev/null and b/src/static/img/zalf_logo.png differ diff --git a/src/static/img/zalf_logo.svg b/src/static/img/zalf_logo.svg new file mode 100644 index 0000000..a3615cf Binary files /dev/null and b/src/static/img/zalf_logo.svg differ diff --git a/src/static/style.css b/src/static/style.css new file mode 100644 index 0000000..9822c09 --- /dev/null +++ b/src/static/style.css @@ -0,0 +1,6 @@ + +#docs-site-header + { + text-align: left; + color: #004900 +} \ No newline at end of file diff --git a/src/submit_research_data/data_preparation.md b/src/submit_research_data/data_preparation.md new file mode 100644 index 0000000..1f7f554 --- /dev/null +++ b/src/submit_research_data/data_preparation.md @@ -0,0 +1,56 @@ +--- +label: Data Preparation +order: 30 +--- + +# Accompanying Disciplines + +Beside common soil and agricultural data, accompanying data from different research fields concern the research field +soil-agricultural science. + +
+ +_Overview of existing standards_ + +### Land use classification + +- The **CORINE Land Cover**![](/static/img/two_star.png) provides an EU-wide unique and comparable data set of land cover with 44 land use classes, +out of which 37 classes are relevant for Germany. Mapping of the land cover and land use was performed on the basis of +satellite remote sensing images on a scale of 1:100,000. +- The German land survey authorities provide topographic data and maps. Their contents are reported in the feature type +catalogue of the Official Topographical Cartographic Information System (**ATKIS**)![](/static/img/two_star.png), where topographical appearances are +classified in categories with land use information. ATKIS data are available in different scales (from 1:1,000,000 up to 1:25,000). +Because of the higher spatial resolution, compared to e.g. CORINE Land Cover, the feature type’s catalogue comprises more +land use classes (around 130 feature types). + +### Meteorology + +Meteorological raw-data are often available in time series with different temporal distributions. +The conversion into convertible data and the supply for further processing is challenging. + +- The German **DIN 1319-1:1995-01ff**![](/static/img/two_star.png) series defines basics in meteorological measurement techniques e.g. terms of measuring +equipment (Parts 1 and 2) and measurement uncertainties (3 and 4). +- On international scale the **EN ISO 20988:2007**![](/static/img/two_star.png) provides a detailed guideline to estimate measurement uncertainties +for meteorological data. It includes statistical operations on systematic data deviations, calibration, ring trials, drift controls, +and evaluation on variances. In particular the standard helps to evaluate and validate air quality data. +- **ISO 9169:2006**![](/static/img/two_star.png) defines the performance characteristics of an automatic meteorological system. +- Meteorological measurements are described in guidelines **VDI 3786ff** including an extensive glossary and instructions on data aggregation for archiving (1) and air temperature (3). + +### Vegetation +- Phenology stages can be described by the BBCH![](/static/img/two_star.png) scale [[1]](https://www.researchgate.net/publication/281574833_The_BBCH_system_to_coding_the_phenological_growth_stages_of_plants-history_and_publications). +The coding system was first published in 1992 by different expert groups and was than extended to all common crop types. +- The Minimum Information standard [MIAPPE](https://www.miappe.org)![](/static/img/two_star.png) is open and community driven. +It defines a list of necessary attributes to describe and to harmonize data from plant phenotyping experiments. +- The Braun-Blanquet-Scale![](/static/img/two_star.png), as part of the Relevé Method, defines approaches of vegetation survey. +- The Multi-Crop Passport Descriptors (FAO/IPGRI, [Version 2.1](https://www.bioversityinternational.org/fileadmin/user_upload/online_library/publications/pdfs/FAOBIOVERSITY_MULTI-CROP_PASSPORT_DESCRIPTORS_V.2.1_2015_2020.pdf)) are widely used as standardized lists for breeding and germplasm +data and for information exchange across crops. It is compatible with the descriptor lists used by FAO World information +and Early Warning System on plant genetic resources (PGR) and the GENESYS global portal. + +:::bonares_reference + +### References + +[1] Meier, U., H. Bleiholder, L. Buhr, C. Feller, H. Hack, M. Heß, P.D. Lancashire, et al. (2009). +The BBCH system to coding the phenological growth stages of plants – history and publications –. Journal f. Kulturpflanzen 61(2): 41-52. + +::: \ No newline at end of file diff --git a/src/submit_research_data/index.md b/src/submit_research_data/index.md new file mode 100644 index 0000000..465908c --- /dev/null +++ b/src/submit_research_data/index.md @@ -0,0 +1,21 @@ +--- +label: Research Data +icon: upload +expanded: true +order: 130 +--- +# Research Data + +Lorem ipsum dolor sit amet, consectetur adipiscing elit. Praesent tristique nibh in leo varius tincidunt nec id magna. Donec sit amet gravida purus. Aliquam molestie hendrerit aliquam. Nullam efficitur tortor nunc, ac porttitor nisi semper sit amet. In hac habitasse platea dictumst. Vivamus aliquet diam sem, facilisis fringilla ipsum commodo in. Mauris venenatis turpis sed metus tempus eleifend. Mauris pulvinar, mauris et faucibus cursus, orci eros ullamcorper metus, vel feugiat sapien metus porta quam. Fusce in sollicitudin quam. + +Quisque vehicula, nisl ac pellentesque porta, lorem ligula vestibulum nisl, sit amet vulputate leo ligula eu nunc. Fusce eu pulvinar ex, a posuere arcu. Nullam rutrum volutpat gravida. Mauris eu ultrices tellus. Praesent neque erat, pharetra at lorem vitae, vestibulum eleifend metus. Nullam interdum, massa id semper vulputate, risus felis aliquet arcu, ut finibus turpis lorem at est. Nunc sit amet ultrices lectus, sit amet malesuada ex. Vestibulum viverra leo ut consequat fermentum. + +Ut dictum ligula a vehicula ornare. Suspendisse euismod semper tempor. Aliquam pellentesque ex in est aliquam, non iaculis velit cursus. Suspendisse dapibus diam tincidunt luctus porta. Curabitur volutpat sapien et ante rhoncus faucibus. Phasellus tempor iaculis porttitor. Duis est mauris, tristique at interdum eget, finibus eget ligula. Vestibulum suscipit, leo sit amet accumsan venenatis, velit justo tincidunt lorem, interdum aliquam diam mi nec sem. + +Donec vel fringilla nisi. Integer aliquet ligula vitae neque ultricies, ultricies tristique lorem fringilla. Phasellus iaculis eu risus auctor tempor. Praesent neque nunc, faucibus ut tempor non, lobortis ac arcu. Integer varius hendrerit massa. Lorem ipsum dolor sit amet, consectetur adipiscing elit. Morbi blandit quam sapien, vel porttitor lectus scelerisque sed. + +Aenean hendrerit rutrum dolor id maximus. Sed diam dui, volutpat nec scelerisque in, faucibus eget orci. Nulla vitae massa augue. Etiam et nunc nunc. Nulla quis orci vehicula, gravida sem ut, tempor nisl. In aliquam malesuada erat nec consectetur. Vestibulum pharetra venenatis mi, vel tempus nunc elementum a. Morbi ac elementum enim. Praesent vestibulum ornare nisl nec porttitor. Proin ut maximus sem. + +[!ref](/submit_research_data/name.md) + + diff --git a/static/thumbs.db b/static/thumbs.db deleted file mode 100644 index 1edc57d..0000000 Binary files a/static/thumbs.db and /dev/null differ