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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(celdaHeatmap,celda_C)
S3method(celdaHeatmap,celda_CG)
S3method(celdaHeatmap,celda_G)
S3method(celdaProbabilityMap,celda_C)
S3method(celdaProbabilityMap,celda_CG)
S3method(celdaTsne,celda_C)
S3method(celdaTsne,celda_CG)
S3method(celdaTsne,celda_G)
S3method(clusterProbability,celda_C)
S3method(clusterProbability,celda_CG)
S3method(clusterProbability,celda_G)
S3method(factorizeMatrix,celda_C)
S3method(factorizeMatrix,celda_CG)
S3method(factorizeMatrix,celda_G)
S3method(featureModuleLookup,celda_C)
S3method(featureModuleLookup,celda_CG)
S3method(featureModuleLookup,celda_G)
S3method(perplexity,celda_C)
S3method(perplexity,celda_CG)
S3method(perplexity,celda_G)
S3method(plotGridSearchPerplexity,celda_C)
S3method(plotGridSearchPerplexity,celda_CG)
S3method(plotGridSearchPerplexity,celda_G)
S3method(simulateCells,celda_C)
S3method(simulateCells,celda_CG)
S3method(simulateCells,celda_G)
export(DeconX)
export(available_models)
export(celda)
export(celdaGridSearch)
export(celdaHeatmap)
export(celdaProbabilityMap)
export(celdaTsne)
export(celda_C)
export(celda_CG)
export(celda_G)
export(clusterProbability)
export(compareCountMatrix)
export(completeLogLikelihood)
export(differentialExpression)
export(distinct_colors)
export(factorizeMatrix)
export(featureModuleLookup)
export(featureModuleTable)
export(finalLogLikelihood)
export(logLikelihood)
export(logLikelihood.celda_C)
export(logLikelihood.celda_CG)
export(logLikelihood.celda_G)
export(moduleHeatmap)
export(normalizeCounts)
export(perplexity)
export(plotDimReduceCluster)
export(plotDimReduceFeature)
export(plotDimReduceGrid)
export(plotDimReduceModule)
export(plotGridSearchPerplexity)
export(plotHeatmap)
export(recodeClusterY)
export(recodeClusterZ)
export(resamplePerplexity)
export(runParams)
export(selectBestModel)
export(semi_pheatmap)
export(simulateCells)
export(simulateObservedMatrix)
export(subsetCeldaList)
export(topRank)
export(violinPlot)
import(RColorBrewer)
import(data.table)
import(foreach)
import(grDevices)
import(graphics)
import(grid)
import(gtable)
import(plyr)
import(scales)
useDynLib(celda,"_colSumByGroup")
useDynLib(celda,"_colSumByGroupChange")
useDynLib(celda,"_colSumByGroup_numeric")
useDynLib(celda,"_rowSumByGroup")
useDynLib(celda,"_rowSumByGroupChange")
useDynLib(celda,"_rowSumByGroup_numeric")