requirements_Cytohackathon.sh

pip install tqdm==4.65.0
pip install jsonschema==4.18.0
pip install requests==2.31
pip install path==16.4.0
pip install keras==2.11.0
pip install pyvips==2.0.2
pip install opencv-python==4.7.0.72
pip install numpy==1.22.4
pip install umap-learn==0.5.4
pip install umap-learn[plot]
pip install imageio==2.26.0
pip install keras==2.12.0
pip install seaborn==0.13.0
pip install scikit-learn==1.3.1 
pip install scikit-image==0.20.0
pip install python-bioformats==4.0.7
pip install python-javabridge==4.0.3
pip install scipy==1.11.3 
pip install openslide-python==1.3.0 
pip install torch==2.0.1
pip install torchvision
pip install pytorch-lightning==2.0.9
pip install dask==2023.2.1
pip install pathml==2.1.0
pip install pandas==2.1.1
pip install pyvips==2.2.0
pip install plotly==5.16.1
pip install cellpose==2.2.2
pip install plotnine==0.10.1 
pip install decoupler==1.4.0
pip install matplotlib==3.8.0
pip install scanpy==1.9.5
pip install squidpy==1.2.3 
pip install git+https://github.com/ElementoLab/utag.git@main
pip install nextflow==23.4.1
pip install geojson==3.0.0
pip install tbb==2021.10.0
pip install ipywidgets
pip install ipykernel
pip install git+https://github.com/facebookresearch/detectron2.git@main
pip install Pillow==9.5.0
pip install tensorflow==2.9.3