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ychuest committed Aug 31, 2024
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Expand Up @@ -55,7 +55,7 @@ Awesome-LLMs-meet-genomes is a collection of state-of-the-art, novel, exciting L
| Year | Title | Venue | Paper | Code |
| ---- | ------------------------------------------------------------ | :-----: | :----------------------------------------------------------: | :----------------------------------------------------------: |
| 2024.08 | **Unlocking Efficiency: Adaptive Masking for Gene Transformer Models** | ECAI'24 | [link](https://arxiv.org/pdf/2408.07180) | [link](https://github.com/roysoumya/curriculum-GeneMask) |
| 2024.07 💥💥| **VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling** | ICML'24 | [link](https://arxiv.org/pdf/2405.10812) | [link](https://github.com/Lupin1998/VQDNA) |
| 2024.07 ✨✨| **VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling** | ICML'24 | [link](https://arxiv.org/pdf/2405.10812) | [link](https://github.com/Lupin1998/VQDNA) |
| 2024.07 | **OmniGenome: Aligning RNA Sequences with Secondary Structures in Genomic Foundation Models** | arXiv | [link](https://arxiv.org/abs/2407.11242) | [link](https://github.com/yangheng95/OmniGenomeBench) |
| 2024.07 | **Scorpio : Enhancing Embeddings to Improve Downstream Analysis of DNA sequences** | bioRxiv | [link](https://www.biorxiv.org/content/10.1101/2024.07.19.604359v1.abstract) | [link](https://github.com/EESI/Scorpio) |
| 2024.07 | **DNA language model GROVER learns sequence context in the human genome (可用于蛋白质-DNA结合预测任务)** | Nature Machine Intelligence | [link](https://doi.org/10.1038/s42256-024-00872-0) | [link](https://doi.org/10.5281/zenodo.8373202) [tutorials](https://doi.org/10.5281/zenodo.8373158) |
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