Update README.md

README.md

@@ -53,13 +53,16 @@ Awesome-LLMs-meet-genomes is a collection of state-of-the-art, novel, exciting L
 #### General
 | Year | Title                                                        |  Venue  |                            Paper                             |                             Code                             |
 | ---- | ------------------------------------------------------------ | :-----: | :----------------------------------------------------------: | :----------------------------------------------------------: |
+| 2024.07 | **OmniGenome: Aligning RNA Sequences with Secondary Structures in Genomic Foundation Models** |  arXiv    | [link](https://arxiv.org/abs/2407.11242)  |                              [link](https://github.com/yangheng95/OmniGenomeBench)                           |
 | 2024.07 | **Scorpio : Enhancing Embeddings to Improve Downstream Analysis of DNA sequences** |  bioRxiv    | [link](https://www.biorxiv.org/content/10.1101/2024.07.19.604359v1.abstract)  |                              [link](https://github.com/EESI/Scorpio)                            |
 | 2024.07 | **DNA language model GROVER learns sequence context in the human genome (可用于蛋白质-DNA结合预测任务)** |   Nature Machine Intelligence    | [link](https://doi.org/10.1038/s42256-024-00872-0)  |                              [link](https://doi.org/10.5281/zenodo.8373202)   [tutorials](https://doi.org/10.5281/zenodo.8373158)                            |
+| 2024.05 | **Are Genomic Language Models All You Need? Exploring Genomic Language Models on Protein Downstream Tasks** |   bioRxiv    | [link](https://www.biorxiv.org/content/10.1101/2024.05.20.594989v1)  |                              [link](https://huggingface.co/InstaDeepAI/nucleotide-transformer-v2-50m-3mer-multi-species)                           |
 | 2024.04 | **DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome** |   ICLR'24    | [link](https://openreview.net/pdf?id=oMLQB4EZE1)  |                              [link](https://github.com/MAGICS-LAB/DNABERT_2)                               |
 | 2024.04 | **Species-aware DNA language models capture regulatory elements and their evolution** |   Genome Biology    | [link](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-024-03221-x)  |            [link](https://github.com/gagneurlab/SpeciesLM) |
 | 2024.02 | **GenomicLLM: Exploring Genomic Large Language Models: Bridging the Gap between Natural Language and Gene Sequences** |   bioRxiv    | [link](https://www.biorxiv.org/content/10.1101/2024.02.26.581496v1)  |                                            -                |
 | 2024.02 | **Sequence modeling and design from molecular to genome scale with Evo** |   bioRxiv    | [link](https://www.biorxiv.org/content/10.1101/2024.02.27.582234v1)  |                                             [link](https://github.com/evo-design/evo)                |
 | 2024.01 | **ProkBERT family: genomic language models for microbiome applications** |    Frontiers in Microbiology    | [Link](https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2023.1331233/full) |  [link](https://github.com/nbrgppcu/prokbert)   |
+| 2023.09 | **The Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics** |   bioRxiv    | [link](https://www.biorxiv.org/content/10.1101/2023.01.11.523679v3)  |                              [link](https://github.com/instadeepai/nucleotide-transformer)                           |
 | 2023.08 | **DNAGPT: A Generalized Pre-trained Tool for Versatile DNA Sequence Analysis Tasks** |   bioRxiv    | [link](https://www.bioRxiv.org/content/10.1101/2023.07.11.548628v2)  |                                             [link](https://github.com/TencentAILabHealthcare/DNAGPT)                |
 | 2023.08 | **Understanding the Natural Language of DNA using Encoder-Decoder Foundation Models with Byte-level Precision** |    arxiv   | [link](https://arxiv.org/abs/2311.02333)  |                              [link](https://github.itap.purdue.edu/Clan-labs/ENBED)                               |
 | 2023.07 | **EpiGePT: a Pretrained Transformer model for epigenomics** |   bioRxiv    | [link](https://www.biorxiv.org/content/10.1101/2023.07.15.549134v2)  |                              [link](https://github.com/ZjGaothu/EpiGePT)                               |