meta.yaml

{% set name = "ribominer" %}
{% set version = "0.2.3.2" %}

package:
  name: "{{ name|lower }}"
  version: "{{ version }}"

source:
  url: "https://github.com/xryanglab/RiboMiner/releases/download/v0.2/RiboMiner-{{version}}.tar.gz"
  sha256: ff62a3c5edbe7bb91c382f79e5f4a5c3e49396492c77edb22455cc8b3d642080

build:
  number: 0
  entry_points:
    - cAI=RiboMiner.cAI:main
    - EnrichmentAnalysis=RiboMiner.EnrichmentAnalysis:main
    - EnrichmentAnalysisForSingleTrans=RiboMiner.EnrichmentAnalysisForSingleTrans:main
    - enrichmentMeanDensity=RiboMiner.enrichmentMeanDensity:main
    - ExtractSequenceCenteredOnAPosition=RiboMiner.ExtractSequenceCenteredOnAPosition:main
    - GCContent=RiboMiner.GCContent:main
    - GetProteinCodingSequence=RiboMiner.GetProteinCodingSequence:main
    - GetUTRSequences=RiboMiner.GetUTRSequences:main
    - hydropathyCharge=RiboMiner.hydropathyCharge:main
    - LengthDistribution=RiboMiner.LengthDistribution:main
    - MergeSampleDensitys=RiboMiner.MergeSampleDensitys:main
    - MetageneAnalysis=RiboMiner.MetageneAnalysis:main
    - MetageneAnalysisForTheWholeRegions=RiboMiner.MetageneAnalysisForTheWholeRegions:main
    - OutputTranscriptInfo=RiboMiner.OutputTranscriptInfo:main
    - PausingScore=RiboMiner.PausingScore:main
    - Periodicity=RiboMiner.Periodicity:main
    - PlotEnrichmentRatio=RiboMiner.PlotEnrichmentRatio:main
    - PlotGCContent=RiboMiner.PlotGCContent:main
    - PlotHydropathyCharge=RiboMiner.PlotHydropathyCharge:main
    - PlotMetageneAnalysis=RiboMiner.PlotMetageneAnalysis:main
    - PlotMetageneAnalysisForTheWholeRegions=RiboMiner.PlotMetageneAnalysisForTheWholeRegions:main
    - PlotPolarity=RiboMiner.PlotPolarity:main
    - PlotRiboDensityAroundTriAAMotifs=RiboMiner.PlotRiboDensityAroundTriAAMotifs:main
    - PlotRiboDensityAtEachKindAAOrCodon=RiboMiner.PlotRiboDensityAtEachKindAAOrCodon:main
    - PolarityCalculation=RiboMiner.PolarityCalculation:main
    - ProcessPausingScore=RiboMiner.ProcessPausingScore:main
    - RiboDensityAroundTripleteAAMotifs=RiboMiner.RiboDensityAroundTripleteAAMotifs:main
    - RiboDensityAtEachKindAAOrCodon=RiboMiner.RiboDensityAtEachKindAAOrCodon:main
    - RiboDensityAtEachPosition=RiboMiner.RiboDensityAtEachPosition:main
    - RiboDensityForSpecificRegion=RiboMiner.RiboDensityForSpecificRegion:main
    - RiboDensityOfDiffFrames=RiboMiner.RiboDensityOfDiffFrames:main
    - RPFdist=RiboMiner.RPFdist:main
    - StatisticReadsOnDNAsContam=RiboMiner.StatisticReadsOnDNAsContam:main
    - tAI=RiboMiner.tAI:main
    - tAIPlot=RiboMiner.tAIPlot:main
    - cAIPlot=RiboMiner.cAIPlot:main
    - ModifyHTseq=RiboMiner.ModifyHTseq:main
    - ReadsLengthOfSpecificRegions=RiboMiner.ReadsLengthOfSpecificRegions:main
    - CoverageOfEachTrans=RiboMiner.CoverageOfEachTrans:main
    - PlotTransCoverage=RiboMiner.PlotTransCoverage:main
  script: "{{ PYTHON }} -m pip install . -vv"

requirements:
  host:
    - biopython >=1.70
    - htseq
    - matplotlib >=2.1.0
    - numpy >=1.16.4
    - pandas >=0.24.2
    - pip
    - pysam >=0.15.2
    - pysamstats
    - python
    - ribocode >=1.2.10
    - scipy >=1.1.0
    - seaborn >=0.8.1
  run:
    - biopython >=1.70
    - htseq
    - matplotlib >=2.1.0
    - numpy >=1.16.4
    - pandas >=0.24.2
    - pysam >=0.15.2
    - pysamstats
    - python
    - ribocode >=1.2.10
    - scipy >=1.1.0
    - seaborn >=0.8.1

test:
  imports:
    - RiboMiner
    - data
  commands:
    - cAI --help
    - EnrichmentAnalysis --help
    - EnrichmentAnalysisForSingleTrans --help
    - enrichmentMeanDensity --help
    - ExtractSequenceCenteredOnAPosition --help
    - GCContent --help
    - GetProteinCodingSequence --help
    - GetUTRSequences --help
    - hydropathyCharge --help
    - LengthDistribution --help
    - MergeSampleDensitys --help
    - MetageneAnalysis --help
    - MetageneAnalysisForTheWholeRegions --help
    - OutputTranscriptInfo --help
    - PausingScore --help
    - Periodicity --help
    - PlotEnrichmentRatio --help
    - PlotGCContent --help
    - PlotHydropathyCharge --help
    - PlotMetageneAnalysis --help
    - PlotMetageneAnalysisForTheWholeRegions --help
    - PlotPolarity --help
    - PlotRiboDensityAroundTriAAMotifs --help
    - PlotRiboDensityAtEachKindAAOrCodon --help
    - PolarityCalculation --help
    - ProcessPausingScore --help
    - RiboDensityAroundTripleteAAMotifs --help
    - RiboDensityAtEachKindAAOrCodon --help
    - RiboDensityAtEachPosition --help
    - RiboDensityForSpecificRegion --help
    - RiboDensityOfDiffFrames --help
    - RPFdist --help
    - StatisticReadsOnDNAsContam --help
    - tAI --help
    - tAIPlot --help
    - cAIPlot --help
    - ModifyHTseq --help
    - ReadsLengthOfSpecificRegions --help
    - CoverageOfEachTrans --help
    - PlotTransCoverage --help

about:
  home: "https://github.com/xryanglab/RiboMiner"
  license: GPLv3.0
  license_family: GPL3
  license_file: 
  summary: "A python toolset for mining multi-dimensional features of the translatome with ribosome profiling data"
  doc_url: 
  dev_url: