Merge branch 'master' of https://github.com/xieguigang/mzkit

xieguigang · Nov 27, 2024 · 85eeb71 · 85eeb71
2 parents 5b880dc + 7e21c1b
commit 85eeb71
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Showing 6 changed files with 28 additions and 11 deletions.
diff --git a/Rscript/Library/mzkit_app/vignettes/_assets/R_syntax.js b/Rscript/Library/mzkit_app/vignettes/_assets/R_syntax.js
diff --git a/.../clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/Data/LinearPack.html b/.../clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/Data/LinearPack.html
@@ -33,6 +33,7 @@ <h3>Declare</h3>
    IS: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IS.html">IS[]</a>;
    linears: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/StandardCurve.html">StandardCurve[]</a>;
    peakSamples: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/Linear/TargetPeakPoint.html">TargetPeakPoint[]</a>;
+   # reference standards content levels for multiple ions
    reference: list;
    targetted: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/TargettedData.html">TargettedData</a>;
    time: <a href="/vignettes/clr/System/DateTime.html">DateTime</a>;

diff --git a/...gnettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/DataFile.html b/...gnettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/DataFile.html
@@ -22,26 +22,27 @@ <h2>DataFile</h2>
 
         <h3>Description</h3>
 
-
+        <p>model for a single rawdata file</p>
 
         <h3>Declare</h3>        
 
         <pre>
             <code id="clr_ts">
 # namespace BioNovoGene.Analytical.MassSpectrometry.Math.LinearQuantitative
 export class DataFile {
-   compounds: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IonPeakTableRow.html">IonPeakTableRow[]</a>;
    filename: string;
    FileType: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a>;
+   # the multiple ion peak area data
+   ionPeaks: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IonPeakTableRow.html">IonPeakTableRow[]</a>;
 }
 </code>
         </pre>
 
         <h3>.NET clr type reference tree</h3>
 
         <ol>
-<li>use by <i>property</i> member <code>compounds</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IonPeakTableRow.html">IonPeakTableRow</a></li>
 <li>use by <i>property</i> member <code>FileType</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a></li>
+<li>use by <i>property</i> member <code>ionPeaks</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IonPeakTableRow.html">IonPeakTableRow</a></li>
 </ol>
 
 

diff --git a/...tes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/QuantifyScan.html b/...tes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/QuantifyScan.html
@@ -22,14 +22,16 @@ <h2>QuantifyScan</h2>
 
         <h3>Description</h3>
 
-
+        <p>peak data of a single sample file</p>
 
         <h3>Declare</h3>        
 
         <pre>
             <code id="clr_ts">
 # namespace BioNovoGene.Analytical.MassSpectrometry.Math.LinearQuantitative
-export class QuantifyScan {
+export class QuantifyScan extends <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/DataFile.html">DataFile</a> {
+   filename: string;
+   FileType: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a>;
    ionPeaks: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IonPeakTableRow.html">IonPeakTableRow[]</a>;
    # 定量结果
    quantify: <a href="/vignettes/clr/Microsoft/VisualBasic/Data/csv/IO/DataSet.html">DataSet</a>;
@@ -42,6 +44,8 @@ <h3>Declare</h3>
         <h3>.NET clr type reference tree</h3>
 
         <ol>
+<li>this class extends from <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/DataFile.html">DataFile</a> class: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/DataFile.html">DataFile</a></li>
+<li>use by <i>property</i> member <code>FileType</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a></li>
 <li>use by <i>property</i> member <code>ionPeaks</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/IonPeakTableRow.html">IonPeakTableRow</a></li>
 <li>use by <i>property</i> member <code>quantify</code>: <a href="/vignettes/clr/Microsoft/VisualBasic/Data/csv/IO/DataSet.html">DataSet</a></li>
 <li>use by <i>property</i> member <code>rawX</code>: <a href="/vignettes/clr/Microsoft/VisualBasic/Data/csv/IO/DataSet.html">DataSet</a></li>

diff --git a/...nettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/Standards.html b/...nettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/LinearQuantitative/Standards.html
@@ -22,8 +22,9 @@ <h2>Standards</h2>
 
         <h3>Description</h3>
 
-        <p>The standard curve concentration gradient data.
- (标准品的标准曲线的浓度梯度信息)</p>
+        <p>The standard curve concentration gradient data.</p>
+
+<p>(标准品的标准曲线的浓度梯度信息)</p>
 
         <h3>Declare</h3>        
 
@@ -35,10 +36,13 @@ <h3>Declare</h3>
    C: list;
    # 系数因子，值位于[0,1]区间，默认是1
    Factor: double;
+   # the reference id of the compound
    ID: string;
    # 内标的编号，需要使用这个编号来分别找到离子对和浓度信息
    IS: string;
+   # the is td name
    ISTD: string;
+   # display name of the target compound
    Name: string;
 }
 </code>

diff --git a/...ary/mzkit_app/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html b/...ary/mzkit_app/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html
@@ -22,19 +22,25 @@ <h2>SampleFiles</h2>
 
         <h3>Description</h3>
 
-
+        <p>the sample file types</p>
 
         <h3>Declare</h3>        
 
         <pre>
             <code id="clr_ts">
 # namespace BioNovoGene.Analytical.MassSpectrometry.Math
 export class SampleFiles extends <a href="/vignettes/clr/System/Enum.html">Enum</a> {
+   # the user sample file
    Sample: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a> = 0;
 
-   QC: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a> = 1;
+   # standard curve data file
+   Standard: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a> = 1;
 
-   KB: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a> = 2;
+   # quality control file
+   QC: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a> = 2;
+
+   # the blank
+   KB: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a> = 3;
 
 }
 </code>
@@ -45,6 +51,7 @@ <h3>.NET clr type reference tree</h3>
         <ol>
 <li>this class extends from <a href="/vignettes/clr/System/Enum.html">Enum</a> class: <a href="/vignettes/clr/System/Enum.html">Enum</a></li>
 <li>use by <i>field</i> member <code>Sample</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a></li>
+<li>use by <i>field</i> member <code>Standard</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a></li>
 <li>use by <i>field</i> member <code>QC</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a></li>
 <li>use by <i>field</i> member <code>KB</code>: <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Math/SampleFiles.html">SampleFiles</a></li>
 </ol>