diff --git a/Rscript/Library/MSI_app b/Rscript/Library/MSI_app index 98c4b06d3..e39d5b0cd 160000 --- a/Rscript/Library/MSI_app +++ b/Rscript/Library/MSI_app @@ -1 +1 @@ -Subproject commit 98c4b06d35899ca97aee5d2a446420bb81438ad1 +Subproject commit e39d5b0cd15c554a934ccf149ec13719c3b27bfa diff --git a/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1 b/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1 index 51ade6609..b6f6b8216 100644 --- a/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1 +++ b/Rscript/Library/mzkit_app/man/.extract_pubmed_evidence.1 @@ -1,4 +1,4 @@ -.TH .EXTRACT_PUBMED_EVIDENCE 1 2024-Nov "" ".extract_pubmed_evidence" +.TH .EXTRACT_PUBMED_EVIDENCE 1 2024-Dec "" ".extract_pubmed_evidence" .SH NAME .extract_pubmed_evidence \- .extract_pubmed_evidence(evidence, u, v, type = ['disease','compounds']) diff --git a/Rscript/Library/mzkit_app/man/.graph_table.1 b/Rscript/Library/mzkit_app/man/.graph_table.1 index 6521feb70..8875e9588 100644 --- a/Rscript/Library/mzkit_app/man/.graph_table.1 +++ b/Rscript/Library/mzkit_app/man/.graph_table.1 @@ -1,4 +1,4 @@ -.TH .GRAPH_TABLE 1 2024-Nov "" ".graph_table" +.TH .GRAPH_TABLE 1 2024-Dec "" ".graph_table" .SH NAME .graph_table \- .graph_table(nodes, type = ['disease','compounds']) diff --git a/Rscript/Library/mzkit_app/man/.onLoad.1 b/Rscript/Library/mzkit_app/man/.onLoad.1 index eb36ca47f..cbed7292f 100644 --- a/Rscript/Library/mzkit_app/man/.onLoad.1 +++ b/Rscript/Library/mzkit_app/man/.onLoad.1 @@ -1,4 +1,4 @@ -.TH .ONLOAD 1 2024-Nov "" "Hello, world! This is an example function named 'hello' which prints 'Hello, world!'. You can learn more about package authoring with RStudio at: http://r-pkgs.had.co.nz/ Some useful keyboard shortcuts for package authoring: Install Package: 'Ctrl + Shift + B' Check Package: 'Ctrl + Shift + E' Test Package: 'Ctrl + Shift + T'" +.TH .ONLOAD 1 2024-Dec "" "Hello, world! This is an example function named 'hello' which prints 'Hello, world!'. You can learn more about package authoring with RStudio at: http://r-pkgs.had.co.nz/ Some useful keyboard shortcuts for package authoring: Install Package: 'Ctrl + Shift + B' Check Package: 'Ctrl + Shift + E' Test Package: 'Ctrl + Shift + T'" .SH NAME .onLoad \- .onLoad() .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/.term_maps.1 b/Rscript/Library/mzkit_app/man/.term_maps.1 index ddac2317f..c5aca4f37 100644 --- a/Rscript/Library/mzkit_app/man/.term_maps.1 +++ b/Rscript/Library/mzkit_app/man/.term_maps.1 @@ -1,4 +1,4 @@ -.TH .TERM_MAPS 1 2024-Nov "" ".term_maps" +.TH .TERM_MAPS 1 2024-Dec "" ".term_maps" .SH NAME .term_maps \- .term_maps(x, type = ['disease','compounds']) diff --git a/Rscript/Library/mzkit_app/man/ANOVAGroup.1 b/Rscript/Library/mzkit_app/man/ANOVAGroup.1 index 1924a686b..258625b6d 100644 --- a/Rscript/Library/mzkit_app/man/ANOVAGroup.1 +++ b/Rscript/Library/mzkit_app/man/ANOVAGroup.1 @@ -1,4 +1,4 @@ -.TH ANOVAGROUP 1 2024-Nov "" "Create a dataset for evaluate ANOVA p-value" +.TH ANOVAGROUP 1 2024-Dec "" "Create a dataset for evaluate ANOVA p-value" .SH NAME ANOVAGroup \- ANOVAGroup(data, sampleinfo) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/GCMS_contentTable.1 b/Rscript/Library/mzkit_app/man/GCMS_contentTable.1 index 6d7a271f1..d2fd49b02 100644 --- a/Rscript/Library/mzkit_app/man/GCMS_contentTable.1 +++ b/Rscript/Library/mzkit_app/man/GCMS_contentTable.1 @@ -1,4 +1,4 @@ -.TH GCMS_CONTENTTABLE 1 2024-Nov "" "Create content levels table" +.TH GCMS_CONTENTTABLE 1 2024-Dec "" "Create content levels table" .SH NAME GCMS_contentTable \- GCMS_contentTable(mslIons, calfiles) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/GCMS_linearReport.1 b/Rscript/Library/mzkit_app/man/GCMS_linearReport.1 index cdeb51925..97c4bc83d 100644 --- a/Rscript/Library/mzkit_app/man/GCMS_linearReport.1 +++ b/Rscript/Library/mzkit_app/man/GCMS_linearReport.1 @@ -1,4 +1,4 @@ -.TH GCMS_LINEARREPORT 1 2024-Nov "" "GCMS_linearReport" +.TH GCMS_LINEARREPORT 1 2024-Dec "" "GCMS_linearReport" .SH NAME GCMS_linearReport \- GCMS_linearReport(sim, ions, quantify, calfiles, output.dir = './') diff --git a/Rscript/Library/mzkit_app/man/GCMS_linears.1 b/Rscript/Library/mzkit_app/man/GCMS_linears.1 index 832c613bf..44326f4ba 100644 --- a/Rscript/Library/mzkit_app/man/GCMS_linears.1 +++ b/Rscript/Library/mzkit_app/man/GCMS_linears.1 @@ -1,4 +1,4 @@ -.TH GCMS_LINEARS 1 2024-Nov "" "Create reference linears for GCMS sim data" +.TH GCMS_LINEARS 1 2024-Dec "" "Create reference linears for GCMS sim data" .SH NAME GCMS_linears \- GCMS_linears(contentTable, mslIons, calfiles, peakwidth = [13], diff --git a/Rscript/Library/mzkit_app/man/GCMS_quantify.1 b/Rscript/Library/mzkit_app/man/GCMS_quantify.1 index 07ff00389..9d32148ed 100644 --- a/Rscript/Library/mzkit_app/man/GCMS_quantify.1 +++ b/Rscript/Library/mzkit_app/man/GCMS_quantify.1 @@ -1,4 +1,4 @@ -.TH GCMS_QUANTIFY 1 2024-Nov "" "GCMS_quantify" +.TH GCMS_QUANTIFY 1 2024-Dec "" "GCMS_quantify" .SH NAME GCMS_quantify \- GCMS_quantify(linears, sim, sampleData) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1 b/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1 index 534a50b84..5b4886c9a 100644 --- a/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1 +++ b/Rscript/Library/mzkit_app/man/__deconv_gcms_single.1 @@ -1,4 +1,4 @@ -.TH __DECONV_GCMS_SINGLE 1 2024-Nov "" "__deconv_gcms_single" +.TH __DECONV_GCMS_SINGLE 1 2024-Dec "" "__deconv_gcms_single" .SH NAME __deconv_gcms_single \- __deconv_gcms_single(file, peak.width = [90]) diff --git a/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1 b/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1 index 6f82d6e24..dbc25a6c0 100644 --- a/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1 +++ b/Rscript/Library/mzkit_app/man/__ms1_xic_bins_single.1 @@ -1,4 +1,4 @@ -.TH __MS1_XIC_BINS_SINGLE 1 2024-Nov "" "export XIC data for a single rawdata file" +.TH __MS1_XIC_BINS_SINGLE 1 2024-Dec "" "export XIC data for a single rawdata file" .SH NAME __ms1_xic_bins_single \- __ms1_xic_bins_single(path, mzdiff, outputdir) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/convertToMzPack.1 b/Rscript/Library/mzkit_app/man/convertToMzPack.1 index ab3512b67..b55baa9a2 100644 --- a/Rscript/Library/mzkit_app/man/convertToMzPack.1 +++ b/Rscript/Library/mzkit_app/man/convertToMzPack.1 @@ -1,4 +1,4 @@ -.TH CONVERTTOMZPACK 1 2024-Nov "" "Convert to mzpack data object" +.TH CONVERTTOMZPACK 1 2024-Dec "" "Convert to mzpack data object" .SH NAME convertToMzPack \- convertToMzPack(file) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/deconv_gcms.1 b/Rscript/Library/mzkit_app/man/deconv_gcms.1 index db62be533..a7ee90e7a 100644 --- a/Rscript/Library/mzkit_app/man/deconv_gcms.1 +++ b/Rscript/Library/mzkit_app/man/deconv_gcms.1 @@ -1,4 +1,4 @@ -.TH DECONV_GCMS 1 2024-Nov "" "Make expression peak table deconvolution of the GCMS rawdata" +.TH DECONV_GCMS 1 2024-Dec "" "Make expression peak table deconvolution of the GCMS rawdata" .SH NAME deconv_gcms \- deconv_gcms(rawdata, export.dir = './', diff --git a/Rscript/Library/mzkit_app/man/getDataValues.1 b/Rscript/Library/mzkit_app/man/getDataValues.1 index 2551794ee..9103d74f3 100644 --- a/Rscript/Library/mzkit_app/man/getDataValues.1 +++ b/Rscript/Library/mzkit_app/man/getDataValues.1 @@ -1,4 +1,4 @@ -.TH GETDATAVALUES 1 2024-Nov "" "get values in section$data" +.TH GETDATAVALUES 1 2024-Dec "" "get values in section$data" .SH NAME getDataValues \- getDataValues(section) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/getQuery.1 b/Rscript/Library/mzkit_app/man/getQuery.1 index d6e275b15..274d4b7c4 100644 --- a/Rscript/Library/mzkit_app/man/getQuery.1 +++ b/Rscript/Library/mzkit_app/man/getQuery.1 @@ -1,4 +1,4 @@ -.TH GETQUERY 1 2024-Nov "" "getQuery" +.TH GETQUERY 1 2024-Dec "" "getQuery" .SH NAME getQuery \- getQuery(fileName) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/get_representives.1 b/Rscript/Library/mzkit_app/man/get_representives.1 index 592f098e7..e94e8089d 100644 --- a/Rscript/Library/mzkit_app/man/get_representives.1 +++ b/Rscript/Library/mzkit_app/man/get_representives.1 @@ -1,4 +1,4 @@ -.TH GET_REPRESENTIVES 1 2024-Nov "" "Get n representive spectrums via molecular networking" +.TH GET_REPRESENTIVES 1 2024-Dec "" "Get n representive spectrums via molecular networking" .SH NAME get_representives \- get_representives(ions, top.n = 5, diff --git a/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1 b/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1 index c41c66914..02aac7fe0 100644 --- a/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1 +++ b/Rscript/Library/mzkit_app/man/ionPairsFromMsl.1 @@ -1,4 +1,4 @@ -.TH IONPAIRSFROMMSL 1 2024-Nov "" "Read ion pairs data from MSL dataset" +.TH IONPAIRSFROMMSL 1 2024-Dec "" "Read ion pairs data from MSL dataset" .SH NAME ionPairsFromMsl \- ionPairsFromMsl(ions, unit = 'Minute') diff --git a/Rscript/Library/mzkit_app/man/kegg_compounds.1 b/Rscript/Library/mzkit_app/man/kegg_compounds.1 index 1ac2904b2..4961de2d3 100644 --- a/Rscript/Library/mzkit_app/man/kegg_compounds.1 +++ b/Rscript/Library/mzkit_app/man/kegg_compounds.1 @@ -1,4 +1,4 @@ -.TH KEGG_COMPOUNDS 1 2024-Nov "" "Load the kegg database for the annotation" +.TH KEGG_COMPOUNDS 1 2024-Dec "" "Load the kegg database for the annotation" .SH NAME kegg_compounds \- kegg_compounds( precursors = ['[M+H]+','[M+H-H2O]+'], diff --git a/Rscript/Library/mzkit_app/man/knowledge_graph.1 b/Rscript/Library/mzkit_app/man/knowledge_graph.1 index 95021e430..625c6564e 100644 --- a/Rscript/Library/mzkit_app/man/knowledge_graph.1 +++ b/Rscript/Library/mzkit_app/man/knowledge_graph.1 @@ -1,4 +1,4 @@ -.TH KNOWLEDGE_GRAPH 1 2024-Nov "" "Query pubchem for knowledge network" +.TH KNOWLEDGE_GRAPH 1 2024-Dec "" "Query pubchem for knowledge network" .SH NAME knowledge_graph \- knowledge_graph(cid, cache = './graph_kb') diff --git a/Rscript/Library/mzkit_app/man/lipidmaps_repo.1 b/Rscript/Library/mzkit_app/man/lipidmaps_repo.1 index 18090ffff..f36ce688e 100644 --- a/Rscript/Library/mzkit_app/man/lipidmaps_repo.1 +++ b/Rscript/Library/mzkit_app/man/lipidmaps_repo.1 @@ -1,4 +1,4 @@ -.TH LIPIDMAPS_REPO 1 2024-Nov "" "Load lipidmaps data repository from internal data pack" +.TH LIPIDMAPS_REPO 1 2024-Dec "" "Load lipidmaps data repository from internal data pack" .SH NAME lipidmaps_repo \- lipidmaps_repo( repofile = 'system.file'('data/LIPIDMAPS.msgpack', 'package' = 'mzkit'), diff --git a/Rscript/Library/mzkit_app/man/loadTree.1 b/Rscript/Library/mzkit_app/man/loadTree.1 index 0e8cbf1fe..d260c9f2c 100644 --- a/Rscript/Library/mzkit_app/man/loadTree.1 +++ b/Rscript/Library/mzkit_app/man/loadTree.1 @@ -1,4 +1,4 @@ -.TH LOADTREE 1 2024-Nov "" "Load spectrum tree from raw data files" +.TH LOADTREE 1 2024-Dec "" "Load spectrum tree from raw data files" .SH NAME loadTree \- loadTree(files) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/load_LMSD.1 b/Rscript/Library/mzkit_app/man/load_LMSD.1 index 189e0a1f4..3a97e2d29 100644 --- a/Rscript/Library/mzkit_app/man/load_LMSD.1 +++ b/Rscript/Library/mzkit_app/man/load_LMSD.1 @@ -1,4 +1,4 @@ -.TH LOAD_LMSD 1 2024-Nov "" "load the lipidmaps raw database" +.TH LOAD_LMSD 1 2024-Dec "" "load the lipidmaps raw database" .SH NAME load_LMSD \- load_LMSD(filepath, lazy = FALSE) diff --git a/Rscript/Library/mzkit_app/man/mesh_model.1 b/Rscript/Library/mzkit_app/man/mesh_model.1 index fcff04b75..8999347bb 100644 --- a/Rscript/Library/mzkit_app/man/mesh_model.1 +++ b/Rscript/Library/mzkit_app/man/mesh_model.1 @@ -1,4 +1,4 @@ -.TH MESH_MODEL 1 2024-Nov "" "Load mesh background model from run enrichment analysis" +.TH MESH_MODEL 1 2024-Dec "" "Load mesh background model from run enrichment analysis" .SH NAME mesh_model \- mesh_model( topics = NULL) diff --git a/Rscript/Library/mzkit_app/man/ms1_mz_bins.1 b/Rscript/Library/mzkit_app/man/ms1_mz_bins.1 index d86e2fb51..1d834f636 100644 --- a/Rscript/Library/mzkit_app/man/ms1_mz_bins.1 +++ b/Rscript/Library/mzkit_app/man/ms1_mz_bins.1 @@ -1,4 +1,4 @@ -.TH MS1_MZ_BINS 1 2024-Nov "" "Extract the ion m/z features" +.TH MS1_MZ_BINS 1 2024-Dec "" "Extract the ion m/z features" .SH NAME ms1_mz_bins \- ms1_mz_bins(files, mzdiff = 0.001) diff --git a/Rscript/Library/mzkit_app/man/ms1_peaktable.1 b/Rscript/Library/mzkit_app/man/ms1_peaktable.1 index 1ecbf5d9a..19d5845a7 100644 --- a/Rscript/Library/mzkit_app/man/ms1_peaktable.1 +++ b/Rscript/Library/mzkit_app/man/ms1_peaktable.1 @@ -1,4 +1,4 @@ -.TH MS1_PEAKTABLE 1 2024-Nov "" "Export peakstable data from the XIC rawdata files" +.TH MS1_PEAKTABLE 1 2024-Dec "" "Export peakstable data from the XIC rawdata files" .SH NAME ms1_peaktable \- ms1_peaktable(files, mzbins, mzdiff = 0.005, diff --git a/Rscript/Library/mzkit_app/man/ms1_xic_bins.1 b/Rscript/Library/mzkit_app/man/ms1_xic_bins.1 index 75817ef08..f65e7e046 100644 --- a/Rscript/Library/mzkit_app/man/ms1_xic_bins.1 +++ b/Rscript/Library/mzkit_app/man/ms1_xic_bins.1 @@ -1,4 +1,4 @@ -.TH MS1_XIC_BINS 1 2024-Nov "" "Create XIC rawdata file for run peaktable exports" +.TH MS1_XIC_BINS 1 2024-Dec "" "Create XIC rawdata file for run peaktable exports" .SH NAME ms1_xic_bins \- ms1_xic_bins(files, mzdiff = 0.005, diff --git a/Rscript/Library/mzkit_app/man/output_datatables.1 b/Rscript/Library/mzkit_app/man/output_datatables.1 index ad6e5824f..817f01e6c 100644 --- a/Rscript/Library/mzkit_app/man/output_datatables.1 +++ b/Rscript/Library/mzkit_app/man/output_datatables.1 @@ -1,4 +1,4 @@ -.TH OUTPUT_DATATABLES 1 2024-Nov "" "Output result data table" +.TH OUTPUT_DATATABLES 1 2024-Dec "" "Output result data table" .SH NAME output_datatables \- output_datatables(quantify, linears, output.dir = './') diff --git a/Rscript/Library/mzkit_app/man/pack_singleCells.1 b/Rscript/Library/mzkit_app/man/pack_singleCells.1 index 1995dc573..616aadd93 100644 --- a/Rscript/Library/mzkit_app/man/pack_singleCells.1 +++ b/Rscript/Library/mzkit_app/man/pack_singleCells.1 @@ -1,4 +1,4 @@ -.TH PACK_SINGLECELLS 1 2024-Nov "" "pack the multiple single cells samples into one dataset." +.TH PACK_SINGLECELLS 1 2024-Dec "" "pack the multiple single cells samples into one dataset." .SH NAME pack_singleCells \- pack_singleCells(rawdata, tag = NULL) diff --git a/Rscript/Library/mzkit_app/man/parseDescriptors.1 b/Rscript/Library/mzkit_app/man/parseDescriptors.1 index 020729adc..5f9ee16f7 100644 --- a/Rscript/Library/mzkit_app/man/parseDescriptors.1 +++ b/Rscript/Library/mzkit_app/man/parseDescriptors.1 @@ -1,4 +1,4 @@ -.TH PARSEDESCRIPTORS 1 2024-Nov "" "parseDescriptors" +.TH PARSEDESCRIPTORS 1 2024-Dec "" "parseDescriptors" .SH NAME parseDescriptors \- parseDescriptors(descriptors) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/parseNames.1 b/Rscript/Library/mzkit_app/man/parseNames.1 index 88df16436..71e7d1757 100644 --- a/Rscript/Library/mzkit_app/man/parseNames.1 +++ b/Rscript/Library/mzkit_app/man/parseNames.1 @@ -1,4 +1,4 @@ -.TH PARSENAMES 1 2024-Nov "" "parseNames" +.TH PARSENAMES 1 2024-Dec "" "parseNames" .SH NAME parseNames \- parseNames(names) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/parsePubchemMeta.1 b/Rscript/Library/mzkit_app/man/parsePubchemMeta.1 index b6a1ed30b..30c5f843b 100644 --- a/Rscript/Library/mzkit_app/man/parsePubchemMeta.1 +++ b/Rscript/Library/mzkit_app/man/parsePubchemMeta.1 @@ -1,4 +1,4 @@ -.TH PARSEPUBCHEMMETA 1 2024-Nov "" "Parse the compound information" +.TH PARSEPUBCHEMMETA 1 2024-Dec "" "Parse the compound information" .SH NAME parsePubchemMeta \- parsePubchemMeta(document) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/parseXref.1 b/Rscript/Library/mzkit_app/man/parseXref.1 index ee4b5d11c..f7cd5dedd 100644 --- a/Rscript/Library/mzkit_app/man/parseXref.1 +++ b/Rscript/Library/mzkit_app/man/parseXref.1 @@ -1,4 +1,4 @@ -.TH PARSEXREF 1 2024-Nov "" "parseXref" +.TH PARSEXREF 1 2024-Dec "" "parseXref" .SH NAME parseXref \- parseXref(refs) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/plotLinears.1 b/Rscript/Library/mzkit_app/man/plotLinears.1 index 3ec5ea6d6..4235fb752 100644 --- a/Rscript/Library/mzkit_app/man/plotLinears.1 +++ b/Rscript/Library/mzkit_app/man/plotLinears.1 @@ -1,4 +1,4 @@ -.TH PLOTLINEARS 1 2024-Nov "" "plotLinears" +.TH PLOTLINEARS 1 2024-Dec "" "plotLinears" .SH NAME plotLinears \- plotLinears(linears, mslIons = NULL, diff --git a/Rscript/Library/mzkit_app/man/preprocessing_expression.1 b/Rscript/Library/mzkit_app/man/preprocessing_expression.1 index a830e8e24..231d79bab 100644 --- a/Rscript/Library/mzkit_app/man/preprocessing_expression.1 +++ b/Rscript/Library/mzkit_app/man/preprocessing_expression.1 @@ -1,4 +1,4 @@ -.TH PREPROCESSING_EXPRESSION 1 2024-Nov "" "Normalize matrix sample data" +.TH PREPROCESSING_EXPRESSION 1 2024-Dec "" "Normalize matrix sample data" .SH NAME preprocessing_expression \- preprocessing_expression(x, sampleinfo = NULL, diff --git a/Rscript/Library/mzkit_app/man/pubchem_graphjson.1 b/Rscript/Library/mzkit_app/man/pubchem_graphjson.1 index 9b08eaec2..ab2e27b4a 100644 --- a/Rscript/Library/mzkit_app/man/pubchem_graphjson.1 +++ b/Rscript/Library/mzkit_app/man/pubchem_graphjson.1 @@ -1,4 +1,4 @@ -.TH PUBCHEM_GRAPHJSON 1 2024-Nov "" "Parse the pugview xml as the metabolite data object" +.TH PUBCHEM_GRAPHJSON 1 2024-Dec "" "Parse the pugview xml as the metabolite data object" .SH NAME pubchem_graphjson \- pubchem_graphjson(dataXml, process = NULL, diff --git a/Rscript/Library/mzkit_app/man/pubchem_meta.1 b/Rscript/Library/mzkit_app/man/pubchem_meta.1 index 4bba7d28b..55262f8d6 100644 --- a/Rscript/Library/mzkit_app/man/pubchem_meta.1 +++ b/Rscript/Library/mzkit_app/man/pubchem_meta.1 @@ -1,4 +1,4 @@ -.TH PUBCHEM_META 1 2024-Nov "" "Helper script for run pubchem database query" +.TH PUBCHEM_META 1 2024-Dec "" "Helper script for run pubchem database query" .SH NAME pubchem_meta \- pubchem_meta(term) .SH SYNOPSIS diff --git a/Rscript/Library/mzkit_app/man/run.Deconvolution.1 b/Rscript/Library/mzkit_app/man/run.Deconvolution.1 index c5811ad9c..40b08af33 100644 --- a/Rscript/Library/mzkit_app/man/run.Deconvolution.1 +++ b/Rscript/Library/mzkit_app/man/run.Deconvolution.1 @@ -1,4 +1,4 @@ -.TH RUN.DECONVOLUTION 1 2024-Nov "" "Do ms1 deconvolution of the rawdata" +.TH RUN.DECONVOLUTION 1 2024-Dec "" "Do ms1 deconvolution of the rawdata" .SH NAME run.Deconvolution \- run.Deconvolution(rawdata, outputdir = './', diff --git a/Rscript/Library/mzkit_app/man/tolerance.1 b/Rscript/Library/mzkit_app/man/tolerance.1 index 57366513f..c6e8ab959 100644 --- a/Rscript/Library/mzkit_app/man/tolerance.1 +++ b/Rscript/Library/mzkit_app/man/tolerance.1 @@ -1,4 +1,4 @@ -.TH TOLERANCE 1 2024-Nov "" "Create mzdiff tolerance value" +.TH TOLERANCE 1 2024-Dec "" "Create mzdiff tolerance value" .SH NAME tolerance \- tolerance( kind = 'ppm', diff --git a/src/mzkit b/src/mzkit index f17304d0c..7e3c18c81 160000 --- a/src/mzkit +++ b/src/mzkit @@ -1 +1 @@ -Subproject commit f17304d0c5f5944230dd8331d0433c6eeafd4775 +Subproject commit 7e3c18c81efe2017ec903faae9cc3b4e3fa3b677