export lipid class information

xieguigang · Jan 8, 2024 · 315a330 · 315a330
1 parent bc2c57d
commit 315a330
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Showing 7 changed files with 677 additions and 6 deletions.
diff --git a/Rscript/Library/mzkit_app/@export/lipidomics.d.ts b/Rscript/Library/mzkit_app/@export/lipidomics.d.ts
@@ -13,7 +13,7 @@ declare namespace lipidomics {
     * meansrue lipid ions
     * 
     * 
-     * @param lipidclass -
+     * @param lipidclass configs of the target lipid @``T:BioNovoGene.Analytical.MassSpectrometry.Lipidomics.LbmClass`` for run spectrum peaks generation
      * @param adduct -
      * @param minCarbonCount -
      * @param maxCarbonCount -

diff --git a/Rscript/Library/mzkit_app/man/mzDIA/lipidomics/lipidomics/lipid_ions.1 b/Rscript/Library/mzkit_app/man/mzDIA/lipidomics/lipidomics/lipid_ions.1
@@ -16,7 +16,7 @@ meansrue lipid ions
 .PP
 .SH OPTIONS
 .PP
-\fBlipidclass\fB \fR\- -. 
+\fBlipidclass\fB \fR\- configs of the target lipid @\fBT:BioNovoGene.Analytical.MassSpectrometry.Lipidomics.LbmClass\fR for run spectrum peaks generation. 
 .PP
 .PP
 \fBadduct\fB \fR\- -. 

diff --git a/Rscript/Library/mzkit_app/src/mzDIA/LCLipidomics.vb b/Rscript/Library/mzkit_app/src/mzDIA/LCLipidomics.vb
@@ -13,7 +13,7 @@ Module LCLipidomics
     ''' <summary>
     ''' meansrue lipid ions
     ''' </summary>
-    ''' <param name="lipidclass"></param>
+    ''' <param name="lipidclass">configs of the target lipid <see cref="LbmClass"/> for run spectrum peaks generation</param>
     ''' <param name="adduct"></param>
     ''' <param name="minCarbonCount"></param>
     ''' <param name="maxCarbonCount"></param>

diff --git a/...es/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/MarkupData/mzXML/precursorMz.html b/...es/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/MarkupData/mzXML/precursorMz.html
@@ -30,13 +30,13 @@ <h3>Declare</h3>
             <code id="clr_ts">
 # namespace BioNovoGene.Analytical.MassSpectrometry.Assembly.MarkupData.mzXML
 export class precursorMz extends <a href="/vignettes/clr/System/ValueType.html">ValueType</a> {
+   value: double;
    windowWideness: string;
    precursorCharge: double;
    # 母离子可以从这个属性指向的ms1 scan获取，这个属性对应着<a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Assembly/MarkupData/mzXML/scan.html">scan</a>.<a href="#">num</a>属性
    precursorScanNum: string;
    precursorIntensity: double;
    activationMethod: string;
-   value: double;
 }
 </code>
         </pre>

diff --git a/.../mzkit_app/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Lipidomics/LbmClass.html b/.../mzkit_app/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Lipidomics/LbmClass.html
diff --git a/Rscript/Library/mzkit_app/vignettes/mzDIA/lipidomics/lipid_ions.html b/Rscript/Library/mzkit_app/vignettes/mzDIA/lipidomics/lipid_ions.html
@@ -35,7 +35,7 @@ <h3>Arguments</h3>
         <table>
 
 <dt>lipidclass</dt>
-<dd><p><p>-</p></p></dd>
+<dd><p><p>configs of the target lipid <a href="/vignettes/clr/BioNovoGene/Analytical/MassSpectrometry/Lipidomics/LbmClass.html">LbmClass</a> for run spectrum peaks generation</p></p></dd>
 
 
 <dt>adduct</dt>

diff --git a/src/metadb/Lipidomics/LbmClass.vb b/src/metadb/Lipidomics/LbmClass.vb
@@ -1,4 +1,8 @@
-Public Enum LbmClass
+
+''' <summary>
+''' enumerates the lipid structure class
+''' </summary>
+Public Enum LbmClass
     Undefined
     Others
     Unknown