diff --git a/Rscript/Library/MSI_app b/Rscript/Library/MSI_app index 3fc46afcc5..249e63416c 160000 --- a/Rscript/Library/MSI_app +++ b/Rscript/Library/MSI_app @@ -1 +1 @@ -Subproject commit 3fc46afcc572c8596ac2792d7c28b7c9268eb31b +Subproject commit 249e63416c4e64bc35a4082c4baca78b93d1c400 diff --git a/Rscript/Library/mzkit_app/vignettes/mzDIA/MoleculeNetworking.html b/Rscript/Library/mzkit_app/vignettes/mzDIA/MoleculeNetworking.html index 013d04c0f5..50c1805d21 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzDIA/MoleculeNetworking.html +++ b/Rscript/Library/mzkit_app/vignettes/mzDIA/MoleculeNetworking.html @@ -99,9 +99,13 @@

MoleculeNetworking

+ +
+
+
.NET clr function exports
uniqueNames diff --git a/Rscript/Library/mzkit_app/vignettes/mzDIA/lipidomics.html b/Rscript/Library/mzkit_app/vignettes/mzDIA/lipidomics.html index b9e8b57f8f..03e7150730 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzDIA/lipidomics.html +++ b/Rscript/Library/mzkit_app/vignettes/mzDIA/lipidomics.html @@ -74,9 +74,13 @@

lipidomics

+ +
+
+
.NET clr function exports
lipid_ions diff --git a/Rscript/Library/mzkit_app/vignettes/mzDIA/metadna.html b/Rscript/Library/mzkit_app/vignettes/mzDIA/metadna.html index 1f1fd636ff..f9e37f8229 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzDIA/metadna.html +++ b/Rscript/Library/mzkit_app/vignettes/mzDIA/metadna.html @@ -74,6 +74,7 @@

metadna

+
.NET clr type export
metadna: Algorithm @@ -81,7 +82,10 @@

metadna

implements of the metadna algorithm in VisualBasic language

+
+
+
.NET clr function exports
read.metadna.infer diff --git a/Rscript/Library/mzkit_app/vignettes/mzDIA/mzkit.simulator.html b/Rscript/Library/mzkit_app/vignettes/mzDIA/mzkit.simulator.html index 6520d1bd3c..fc814511d5 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzDIA/mzkit.simulator.html +++ b/Rscript/Library/mzkit_app/vignettes/mzDIA/mzkit.simulator.html @@ -74,9 +74,13 @@

mzkit.simulator

+ +
+
+
.NET clr function exports
read.kcf diff --git a/Rscript/Library/mzkit_app/vignettes/mzDIA/spectrumPool.html b/Rscript/Library/mzkit_app/vignettes/mzDIA/spectrumPool.html index 20c5464b79..e6623054e2 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzDIA/spectrumPool.html +++ b/Rscript/Library/mzkit_app/vignettes/mzDIA/spectrumPool.html @@ -75,9 +75,13 @@

spectrumPool

+ +
+
+
.NET clr function exports
createPool diff --git a/Rscript/Library/mzkit_app/vignettes/mz_quantify/GCMS.html b/Rscript/Library/mzkit_app/vignettes/mz_quantify/GCMS.html index 77805abf34..3bca9ccd49 100644 --- a/Rscript/Library/mzkit_app/vignettes/mz_quantify/GCMS.html +++ b/Rscript/Library/mzkit_app/vignettes/mz_quantify/GCMS.html @@ -74,9 +74,13 @@

GCMS

+ +
+
+
.NET clr function exports
as.quantify.ion diff --git a/Rscript/Library/mzkit_app/vignettes/mz_quantify/Linears.html b/Rscript/Library/mzkit_app/vignettes/mz_quantify/Linears.html index c804d57284..468d493c44 100644 --- a/Rscript/Library/mzkit_app/vignettes/mz_quantify/Linears.html +++ b/Rscript/Library/mzkit_app/vignettes/mz_quantify/Linears.html @@ -74,9 +74,13 @@

Linears

+ +
+
+
.NET clr function exports
lines.table diff --git a/Rscript/Library/mzkit_app/vignettes/mz_quantify/MRMLinear.html b/Rscript/Library/mzkit_app/vignettes/mz_quantify/MRMLinear.html index 38710fe04b..1d269399d7 100644 --- a/Rscript/Library/mzkit_app/vignettes/mz_quantify/MRMLinear.html +++ b/Rscript/Library/mzkit_app/vignettes/mz_quantify/MRMLinear.html @@ -74,9 +74,13 @@

MRMLinear

+ +
+
+
.NET clr function exports
MRM.arguments diff --git a/Rscript/Library/mzkit_app/vignettes/mz_quantify/math.html b/Rscript/Library/mzkit_app/vignettes/mz_quantify/math.html index a20f1b71e1..c0df43c6ba 100644 --- a/Rscript/Library/mzkit_app/vignettes/mz_quantify/math.html +++ b/Rscript/Library/mzkit_app/vignettes/mz_quantify/math.html @@ -74,9 +74,13 @@

math

+ +
+
+
.NET clr function exports
resample diff --git a/Rscript/Library/mzkit_app/vignettes/mz_quantify/mzDeco.html b/Rscript/Library/mzkit_app/vignettes/mz_quantify/mzDeco.html index a872825909..58125a92e9 100644 --- a/Rscript/Library/mzkit_app/vignettes/mz_quantify/mzDeco.html +++ b/Rscript/Library/mzkit_app/vignettes/mz_quantify/mzDeco.html @@ -83,6 +83,7 @@

mzDeco

+
.NET clr type export
peak_feature: PeakFeature @@ -114,7 +115,10 @@

mzDeco

+
+
+
.NET clr function exports
read.xcms_peaks diff --git a/Rscript/Library/mzkit_app/vignettes/mz_quantify/visualPlots.html b/Rscript/Library/mzkit_app/vignettes/mz_quantify/visualPlots.html index 919988a4e0..0601dcc544 100644 --- a/Rscript/Library/mzkit_app/vignettes/mz_quantify/visualPlots.html +++ b/Rscript/Library/mzkit_app/vignettes/mz_quantify/visualPlots.html @@ -74,9 +74,13 @@

visualPlots

+ +
+
+
.NET clr function exports
standard_curve diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/GCxGC.html b/Rscript/Library/mzkit_app/vignettes/mzkit/GCxGC.html index 77db3d70e5..b8b031ffb0 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/GCxGC.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/GCxGC.html @@ -96,9 +96,13 @@

GCxGC

+ +
+
+
.NET clr function exports
TIC2D diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/MSI.html b/Rscript/Library/mzkit_app/vignettes/mzkit/MSI.html index 5b0e38ae04..4ff11b1930 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/MSI.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/MSI.html @@ -78,9 +78,13 @@

MSI

+ +
+
+
.NET clr function exports
scale diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/Mummichog.html b/Rscript/Library/mzkit_app/vignettes/mzkit/Mummichog.html index 301b083ea5..78e8a6a2df 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/Mummichog.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/Mummichog.html @@ -76,9 +76,13 @@

Mummichog

+ +
+
+
.NET clr function exports
mzScore diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/NMR.html b/Rscript/Library/mzkit_app/vignettes/mzkit/NMR.html index b4fcaf7698..96db44d9b5 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/NMR.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/NMR.html @@ -74,9 +74,13 @@

NMR

+ +
+
+
.NET clr function exports
read.nmrML diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/ProteoWizard.html b/Rscript/Library/mzkit_app/vignettes/mzkit/ProteoWizard.html index 17ad856877..9d2fdc4e4f 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/ProteoWizard.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/ProteoWizard.html @@ -77,9 +77,13 @@

ProteoWizard

+ +
+
+
.NET clr function exports
msconvert.ready diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/RamanSpectroscopy.html b/Rscript/Library/mzkit_app/vignettes/mzkit/RamanSpectroscopy.html index 3683b8d90f..7229f68cea 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/RamanSpectroscopy.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/RamanSpectroscopy.html @@ -108,9 +108,13 @@

RamanSpectroscopy

+ +
+
+
.NET clr function exports
readFile diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/SMILES.html b/Rscript/Library/mzkit_app/vignettes/mzkit/SMILES.html index d7fa037488..719d24239e 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/SMILES.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/SMILES.html @@ -83,9 +83,13 @@

SMILES

+ +
+
+
.NET clr function exports
parse diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/SingleCells.html b/Rscript/Library/mzkit_app/vignettes/mzkit/SingleCells.html index c5b2f01e76..32ea757b0a 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/SingleCells.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/SingleCells.html @@ -83,9 +83,13 @@

SingleCells

+ +
+
+
.NET clr function exports
mz_matrix diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/ThermoRaw.html b/Rscript/Library/mzkit_app/vignettes/mzkit/ThermoRaw.html index 14cc72dc7c..ab87207c84 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/ThermoRaw.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/ThermoRaw.html @@ -74,9 +74,13 @@

ThermoRaw

+ +
+
+
.NET clr function exports
MSI_pixels diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/TissueMorphology.html b/Rscript/Library/mzkit_app/vignettes/mzkit/TissueMorphology.html index 4a8f072a84..357023a98d 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/TissueMorphology.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/TissueMorphology.html @@ -77,9 +77,13 @@

TissueMorphology

+ +
+
+
.NET clr function exports
tag_samples diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/UVSpectroscopy.html b/Rscript/Library/mzkit_app/vignettes/mzkit/UVSpectroscopy.html index f1fe131419..ea940be1d6 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/UVSpectroscopy.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/UVSpectroscopy.html @@ -74,9 +74,13 @@

UVSpectroscopy

+ +
+
+
.NET clr function exports
get_instrument diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/annotation.html b/Rscript/Library/mzkit_app/vignettes/mzkit/annotation.html index 9d5e9c5f63..97eb0a6748 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/annotation.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/annotation.html @@ -74,6 +74,7 @@

annotation

+
.NET clr type export
xref: xref @@ -82,7 +83,10 @@

annotation

(对某一个物质在数据库之间的相互引用编号)

+
+
+
.NET clr function exports
xref diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/assembly.html b/Rscript/Library/mzkit_app/vignettes/mzkit/assembly.html index d35a3bff17..a8d0dba77f 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/assembly.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/assembly.html @@ -86,9 +86,13 @@

Mass spectrometry data format

+ +
+
+
.NET clr function exports
read.msl diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/chromatogram.html b/Rscript/Library/mzkit_app/vignettes/mzkit/chromatogram.html index f18d955105..891d44ab5f 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/chromatogram.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/chromatogram.html @@ -78,6 +78,7 @@

chromatogram

+
.NET clr type export
overlaps: ChromatogramOverlap @@ -85,7 +86,10 @@

chromatogram

a collection of Chromatogram

+
+
+
.NET clr function exports
as.chromatogram diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/data.html b/Rscript/Library/mzkit_app/vignettes/mzkit/data.html index 7feab22ffa..d6345ec95c 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/data.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/data.html @@ -74,9 +74,13 @@

data

+ +
+
+
.NET clr function exports
splash_id diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/flexImaging.html b/Rscript/Library/mzkit_app/vignettes/mzkit/flexImaging.html index b1cb0b4299..52545599ba 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/flexImaging.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/flexImaging.html @@ -74,9 +74,13 @@

flexImaging

+ +
+
+
.NET clr function exports
read.metadata diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/formula.html b/Rscript/Library/mzkit_app/vignettes/mzkit/formula.html index 916bdf07de..73e4e42310 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/formula.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/formula.html @@ -112,9 +112,13 @@

formula

+ +
+
+
.NET clr function exports
registerAnnotations diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/hmdb_kit.html b/Rscript/Library/mzkit_app/vignettes/mzkit/hmdb_kit.html index 1693cb96f7..f80412c728 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/hmdb_kit.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/hmdb_kit.html @@ -74,9 +74,13 @@

hmdb_kit

+ +
+
+
.NET clr function exports
read.hmdb_spectrals diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/massbank.html b/Rscript/Library/mzkit_app/vignettes/mzkit/massbank.html index 3ff51aa56e..0d2c5607f3 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/massbank.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/massbank.html @@ -74,9 +74,13 @@

massbank

+ +
+
+
.NET clr function exports
mona.msp_metadata diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/math.html b/Rscript/Library/mzkit_app/vignettes/mzkit/math.html index 949b662236..00b7c1c5a1 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/math.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/math.html @@ -74,9 +74,13 @@

math

+ +
+
+
.NET clr function exports
mz diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/metadb.html b/Rscript/Library/mzkit_app/vignettes/mzkit/metadb.html index 3a81168417..ced39dcc6f 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/metadb.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/metadb.html @@ -74,9 +74,13 @@

metadb

+ +
+
+
.NET clr function exports
mass_search.index diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/mzPack.html b/Rscript/Library/mzkit_app/vignettes/mzkit/mzPack.html index e46f2e3648..4ea5d400af 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/mzPack.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/mzPack.html @@ -74,9 +74,13 @@

mzPack

+ +
+
+
.NET clr function exports
getSampleTags diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/mzweb.html b/Rscript/Library/mzkit_app/vignettes/mzkit/mzweb.html index 5ad4fcca40..1d0baab5b8 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/mzweb.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/mzweb.html @@ -74,9 +74,13 @@

mzweb

+ +
+
+
.NET clr function exports
loadXcmsRData diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/pubchem_kit.html b/Rscript/Library/mzkit_app/vignettes/mzkit/pubchem_kit.html index 176cb57ca4..081adcca41 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/pubchem_kit.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/pubchem_kit.html @@ -98,6 +98,7 @@

pubchem_kit

+
.NET clr type export
pubmed: PubMed @@ -105,7 +106,10 @@

pubchem_kit

+
+
+
.NET clr function exports
read.pubmed diff --git a/Rscript/Library/mzkit_app/vignettes/mzkit/spectrumTree.html b/Rscript/Library/mzkit_app/vignettes/mzkit/spectrumTree.html index 923c6243ba..bf9d196eb6 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzkit/spectrumTree.html +++ b/Rscript/Library/mzkit_app/vignettes/mzkit/spectrumTree.html @@ -75,9 +75,13 @@

spectrumTree

+ +
+
+
.NET clr function exports
new diff --git a/Rscript/Library/mzkit_app/vignettes/mzplot/ChemicalDraw.html b/Rscript/Library/mzkit_app/vignettes/mzplot/ChemicalDraw.html index c182a2b868..014c2e2c35 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzplot/ChemicalDraw.html +++ b/Rscript/Library/mzkit_app/vignettes/mzplot/ChemicalDraw.html @@ -74,9 +74,13 @@

ChemicalDraw

+ +
+
+
.NET clr function exports
KCFDraw diff --git a/Rscript/Library/mzkit_app/vignettes/mzplot/MsImaging.html b/Rscript/Library/mzkit_app/vignettes/mzplot/MsImaging.html index 5a7dcf2d5f..e1c95775c0 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzplot/MsImaging.html +++ b/Rscript/Library/mzkit_app/vignettes/mzplot/MsImaging.html @@ -82,9 +82,13 @@

MsImaging

+ +
+
+
.NET clr function exports
split.layer diff --git a/Rscript/Library/mzkit_app/vignettes/mzplot/NMR.html b/Rscript/Library/mzkit_app/vignettes/mzplot/NMR.html index 749e7d03c4..44bf6a1c6e 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzplot/NMR.html +++ b/Rscript/Library/mzkit_app/vignettes/mzplot/NMR.html @@ -74,9 +74,13 @@

NMR

+ +
+
+
.NET clr function exports
plot_nmr diff --git a/Rscript/Library/mzkit_app/vignettes/mzplot/tissue.html b/Rscript/Library/mzkit_app/vignettes/mzplot/tissue.html index d8672b864d..ca70366f33 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzplot/tissue.html +++ b/Rscript/Library/mzkit_app/vignettes/mzplot/tissue.html @@ -74,9 +74,13 @@

tissue

+ +
+
+
.NET clr function exports
scan_tissue diff --git a/Rscript/Library/mzkit_app/vignettes/mzplot/visual.html b/Rscript/Library/mzkit_app/vignettes/mzplot/visual.html index f4acac4a28..ccb5a1561e 100644 --- a/Rscript/Library/mzkit_app/vignettes/mzplot/visual.html +++ b/Rscript/Library/mzkit_app/vignettes/mzplot/visual.html @@ -74,9 +74,13 @@

visual

+ +
+
+
.NET clr function exports
gcxgc_heatmap