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1. covSampler covSampler Public

   A subsampling method for large-scale SARS-CoV-2 genome data sets

   Python 2

2. CovRecomb CovRecomb Public

   A method to detect the inter-lineage recombinant of SARS-CoV-2

   Jupyter Notebook 1

3. ImmuCC ImmuCC Public

   Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.

   R 25 23

4. RECDS RECDS Public

   RECDS identifies cluster-transition determining sites underlying the antigenic evolution of seasonal influenza viruses

   Python 3 1

5. virome_pipeline virome_pipeline Public

   A general pipeline constructed for viral metagenomes analysis from NGS read data.

   R 9 1

6. sitePath sitePath Public

   Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations

   R 9 2