From 63fa4cdd568a50fc62ee15821cd1543852dbedf0 Mon Sep 17 00:00:00 2001 From: ThomasHickman Date: Mon, 15 Jan 2018 16:59:38 +0000 Subject: [PATCH] libary -> library --- gatkcwlgenerator/{js_libary.js => js_library.js} | 0 gatkcwlgenerator/json2cwl.py | 12 ++++++------ 2 files changed, 6 insertions(+), 6 deletions(-) rename gatkcwlgenerator/{js_libary.js => js_library.js} (100%) diff --git a/gatkcwlgenerator/js_libary.js b/gatkcwlgenerator/js_library.js similarity index 100% rename from gatkcwlgenerator/js_libary.js rename to gatkcwlgenerator/js_library.js diff --git a/gatkcwlgenerator/json2cwl.py b/gatkcwlgenerator/json2cwl.py index 4cc9a62..77cae1e 100644 --- a/gatkcwlgenerator/json2cwl.py +++ b/gatkcwlgenerator/json2cwl.py @@ -46,17 +46,17 @@ def cwl_generator(json_, cwl): cwl["inputs"] = inputs cwl["outputs"] = outputs -def get_js_libary(): - js_libary_path = os.path.join( +def get_js_library(): + js_library_path = os.path.join( os.path.dirname(__file__), - "js_libary.js" + "js_library.js" ) - with open(js_libary_path) as file: + with open(js_library_path) as file: return file.read() -JS_LIBARY = get_js_libary() +JS_LIBRARY = get_js_library() def json2cwl(GATK_json, cwl_dir, cmd_line_options): """ @@ -82,7 +82,7 @@ def json2cwl(GATK_json, cwl_dir, cmd_line_options): { "class": "InlineJavascriptRequirement", "expressionLib": [ - PreservedScalarString(JS_LIBARY) + PreservedScalarString(JS_LIBRARY) ] } ] + ([]