Massbank spectrum search #285
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
container will need galaxyproject/galaxy#19425 this is because the used versions are from bioconda and are now masked (due to strict channel priority) by newer conda-forge packages ``` [Jan 21 12:47:26] SERR LibMambaUnsatisfiableError: Encountered problems while solving: [Jan 21 12:47:26] SERR - package perl-uri-1.71-pl526_3 is excluded by strict repo priority [Jan 21 12:47:26] SERR - package perl-text-csv-1.33-pl526_1 is excluded by strict repo priority [Jan 21 12:47:26] SERR - package perl-soap-lite-1.19-0 requires perl-io-socket-ssl, but none of the providers can be installed [Jan 21 12:47:26] SERR - package perl-html-template-2.95-0 requires perl-scalar-list-utils, but none of the providers can be installed ```
19 tasks
|
Tool seems broken (API / API URL apparently changed)? |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I would like to get a container for https://github.com/workflow4metabolomics/wrapper-bank-massbank-spectrum_search and therefore move the tool to this repo where it also may get more maintenance.
TODO
fgiacomoniadmin permissions the the TS user used in the CI?Alternatively we could add https://github.com/workflow4metabolomics/wrapper-bank-massbank-spectrum_search to the planemo monitor.
FOR CONTRIBUTOR: