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Add camera new tools
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@DamienCode404
DamienCode404 committed Oct 11, 2024
1 parent f858399 commit 811f290
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49 changes: 45 additions & 4 deletions tools/camera/.shed.yml
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name: camera
owner: workflow4metabolomics
remote_repository_url:
homepage_url:
remote_repository_url:
homepage_url:
categories:
- Metabolomics

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owner: workflow4metabolomics
include:
[*default-includes, abims_CAMERA_combinexsAnnos.xml, CAMERA_combinexsAnnos.r]
camera_groupfwhm:
description: '[Metabolomics][W4M][LC-MS] CAMERA R Package - Peak Grouping by Full Width at Half Maximum (FWHM)'
long_description: |
Group peaks within a defined retention time window using Full Width at Half Maximum (FWHM).
Facilitates the detection of chromatographic features across different samples for LC-MS data.
Part of the W4M project: http://workflow4metabolomics.org
CAMERA: http://bioconductor.org/packages/release/bioc/html/CAMERA.html
owner: workflow4metabolomics
include:
[*default-includes, camera_groupfwhm.xml, camera_groupfwhm.r]
camera_groupcorr:
description: '[Metabolomics][W4M][LC-MS] CAMERA R Package - Peak Grouping by Correlation'
long_description: |
Group peaks based on their retention time and intensity correlations across samples,
identifying peaks likely to originate from the same compound. This helps enhance feature annotation
and identification in LC-MS data.
Part of the W4M project: http://workflow4metabolomics.org
CAMERA: http://bioconductor.org/packages/release/bioc/html/CAMERA.html
owner: workflow4metabolomics
include:
[*default-includes, groupCorr.xml, CAMERA_groupCorr.R]
camera_findisotopes:
description: '[Metabolomics][W4M][LC-MS] CAMERA R Package - Isotope Detection'
long_description: |
Detect isotope patterns in LC-MS peak lists based on mass differences and expected isotope ratios,
annotating isotopes for use in downstream metabolomic analysis.
Part of the W4M project: http://workflow4metabolomics.org
CAMERA: http://bioconductor.org/packages/release/bioc/html/CAMERA.html
owner: workflow4metabolomics
include:
[*default-includes, findIsotopes.xml, CAMERA_findIsotopes.R]
camera_findadducts:
description: '[Metabolomics][W4M][LC-MS] CAMERA R Package - Adduct Detection'
long_description: |
Identify possible adducts in mass spectrometry data by detecting characteristic mass shifts between peaks,
facilitating the determination of molecular ions and their adducts for more accurate metabolite identification.
Part of the W4M project: http://workflow4metabolomics.org
CAMERA: http://bioconductor.org/packages/release/bioc/html/CAMERA.html
owner: workflow4metabolomics
include:
[*default-includes, findAdducts.xml, CAMERA_findAdducts.R]

suite:
name: suite_camera
owner: lecorguille
owner: workflow4metabolomics
homepage_url: http://workflow4metabolomics.org
description: '[Metabolomics][W4M][LC-MS] CAMERA R Package - Annotation - Collection of annotation related methods for mass spectrometry data'
long_description: |
CAMERA: Annotation of peaklists generated by xcms, rule based annotation of
isotopes and adducts, EIC correlation based tagging of unknown adducts and
fragments
Part of the W4M project: http://workflow4metabolomics.org
CAMERA: http://bioconductor.org/packages/release/bioc/html/CAMERA.html
CAMERA: http://bioconductor.org/packages/release/bioc/html/CAMERA.html
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