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Feature/update-AtomsBase-0.5#90

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yangmr04 merged 15 commits intodevwexlergroup/FreeBird.jl:devfrom feature/update-AtomsBase-0.5wexlergroup/FreeBird.jl:feature/update-AtomsBase-0.5Copy head branch name to clipboardFeb 3, 2025

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Commits on Feb 1, 2025

• fix: AbstractWalkers functions using AtomsBase 0.5

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• fix: update atomic_symbol calls to handle configuration indexing

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• fix: update boundary condition handling in pbc_dist function

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• fix: boundary condition handling in FreeBirdIO and MonteCarloMoves

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• fix: update boundary condition handling and related tests in AbstractWalkers, EnergyEval, FreeBirdIO, and MonteCarloMoves

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• fix: update dependency versions for AtomsBase, AtomsIO, and ExtXYZ in Project.toml

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• fix: remove duplicated (in AbstractWalkers) helpers.jl file and related include in EnergyEval

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• fix: update random configuration generation in FreeBirdIO to use atomic_system and adjust boundary conditions

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Commits on Feb 3, 2025

• fix: correct expected values in boundary wrap tests for MonteCarloMoves

  yangmr04

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  b29a9f0

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• fix: remove unsupported boundary condition error and improve error handling in EnergyEval and AbstractWalkers tests

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• fix: remove Setfield dependency from Project.toml and related modules

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• fix: update FreeBirdIO walker/config read/write functions

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• fix: correct length check for readin_config in FreeBirdIO tests

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• feat: add view_structure function for ASCII representation of systems and walkers

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• chore: bump version to 0.0.3 in Project.toml

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