An up-to-date, complete, online resource for the protein design community and beyond.
Data has been scraped from the RCSB PDB database using the script in backend/scripts/data_collection.py.
It relies on having a list of PDB codes to scrape data for, cif files to scrape information from, and in-house rules for assigning suggested classification for the protein designs.
Run the following commands:
chmod +x download_pdbs.sh
bash download_pdbs.sh -f pdb_codes.csv -o frontend/static/pdb_files -a
Make sure to specify the output path correctly and adjust the frontend/static/ngl-web-component.js file to point to the correct online path of the pdb files' directory.