Changing big-structure tests.

.github/workflows/big-structure-run-tests.yml

@@ -21,22 +21,25 @@ jobs:
       - name: Checkout de-stress
         uses: actions/checkout@v2
 
-      - name: Checkout dependencies_for_de-stress
-        uses: actions/checkout@v2
-        with:
-          repository: wells-wood-research/dependencies_for_de-stress.git
-          token: ${{ secrets.DEPENDENCIES_ACCESS_TOKEN }}
-          ref: master
-          path: dependencies_for_de-stress
+      - name: Download dependencies
+      - run: |
+          python -m venv headless_destress && source headless_destress/bin/activate && pip install -r requirements.txt
+          cd dependencies_for_de-stress/
+          git clone --branch v2024.18-dev62107 https://github.com/RosettaCommons/rosetta.git
+          echo "Rosetta has been successfully downloaded."
+          cd ../
+          docker compose -f headless-compose.yml build
+          current_dir=$(pwd)
+          echo "Current dir: $current_dir"
+          echo "Building DE-STRESS dependencies. Rosetta will take a few hours to compile."
+          docker run -it --rm -v $current_dir/dependencies_for_de-stress/:/dependencies_for_de-stress de-stress-big-structure:latest sh build_dependencies.sh
+
 
-      - name: Build and test `big-structure`   
+      - name: Test `big-structure`   
         run: |
           chmod -R 755 dependencies_for_de-stress/
-          cd big-structure/
-          docker build -t big-structure .
-          cd ..
           docker run --rm -v $(pwd)/dependencies_for_de-stress/:/dependencies_for_de-stress/ \
-              --env-file .env-testing \
+              --env-file .env \
               big-structure \
               poetry run pytest -m "not rosetta"