Moved methods to subfolder

Continued work on brain.js

docs/examples/xor/index.html

@@ -11,7 +11,7 @@
 		<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
 
 		<!-- Gynaptic -->
-	  <script src="https://cdn.rawgit.com/wagenaartje/gynaptic/55b6d0d1/dist/gynaptic.js"></script>
+	  <script src="https://cdn.rawgit.com/wagenaartje/gynaptic/cf8fbd71/dist/gynaptic.js"></script>
 
 		<!-- Custom -->
 		<link rel="stylesheet" href="../../css/main.css">

docs/index.html

@@ -15,7 +15,7 @@
 		<link rel="stylesheet" href="css/google.css">
 
 		<!-- Gynaptic -->
-	  <script src="https://cdn.rawgit.com/wagenaartje/gynaptic/8a08f2e9/dist/gynaptic.js"></script>
+	  <script src="https://cdn.rawgit.com/wagenaartje/gynaptic/cf8fbd71/dist/gynaptic.js"></script>
 
 		<!-- Custom -->
 		<link rel="stylesheet" href="css/main.css">

package.json

@@ -1,6 +1,6 @@
 {
   "name": "gynaptic",
-  "version": "1.0.0",
+  "version": "1.0.1",
   "description": "architecture-free neural network library with genetic algorithm implementations",
   "main": "./src/gynaptic",
   "scripts": {

src/architect.js

@@ -2,7 +2,7 @@
 var Layer   = require('./layer')
 ,   Network = require('./network')
 ,   Trainer = require('./trainer')
-,   methods = require('./methods');
+,   methods = require('./methods/methods.js');
 
 /* Shorten var names */
 var Mutate     = methods.Mutate

src/brain.js

@@ -4,7 +4,7 @@ if (module) module.exports = Brain;
 /* Import */
 var Neuron  = require('./neuron')
 ,   Layer   = require('./layer')
-,   methods = require('./methods')
+,   methods = require('./methods/methods.js');
 
 /* Shorten var names */
 var Mutate     = methods.Mutate
@@ -152,5 +152,78 @@ Brain.prototype = {
     }
   },
 
+  /**
+   * Mutates the brain
+   */
+
+  mutate: function(method){
+    method = method || Mutate.MODIFY_RANDOM_WEIGHT;
+    switch(method){
+      case(Mutate.SWAP_WEIGHT):
+        break;
+      case(Mutate.MODIFY_RANDOM_WEIGHT):
+        break;
+      case(Mutate.MODIFY_CONNECTIONS):
+        break;
+      case(Mutate.MODIFY_NODES):
+        if(Math.random() >= 0.5){
+          // remove a node
+        } else {
+          // add a node
+          var random = Math.floor(Math.random() * 3);
+          switch(random){
+            case(0): // network
+              console.log('here');
+              // create a randomly sized network
+              var size = Math.floor(Math.random() * (Mutate.MODIFY_NODES.config.network.size[1] - Mutate.MODIFY_NODES.config.network.size[0]) + Mutate.MODIFY_NODES.config.network.size[0]);
+              var hiddenSize =  Math.min(size-2, Math.floor(Math.random() * (Mutate.MODIFY_NODES.config.network.hidden[1] - Mutate.MODIFY_NODES.config.network.hidden[0]) + Mutate.MODIFY_NODES.config.network.hidden[0]));
+
+              var layers = '';
+
+              // x amount of size must be left for remaining layers and output
+              var inputLayerSize = Math.floor(Math.random() * (size-(hiddenSize)-1) + 1);
+              size -= inputLayerSize;
+              layers += inputLayerSize + ', ';
+
+              var hiddenLayerSizes = [];
+              for(var i = 0; i < hiddenSize; i++){
+                var hiddenLayerSize = Math.floor(Math.random() * (size-(hiddenSize - (i + 1) + 1)-1) + 1);
+                hiddenLayerSizes.push(hiddenLayerSize);
+                size -= hiddenLayerSize;
+                layers += hiddenLayerSize + ', ';
+              }
+
+              var outputLayerSize = size;
+              layers += outputLayerSize;
+
+              var node = eval('new Architect.Perceptron(' + layers + ')');
+
+              // must be inserted after input and before output
+              var insert = Math.floor(Math.random() * this.size[1] + this.size[0]);
+              this.nodes.splice(insert, 0, node);
+              this.size[1]++;
+
+              // now project it to another neurons ( should also be done with ratio, will be implemented later)
+              var minBound = Math.max(insert+1, this.size[0]);
+              var input = Math.floor(Math.random() * (this.size[0] + this.size[1] + this.size[2] - minBound) + minBound); // an input node can't connected to an output node, this creates BIAS (?)
+              this.nodes[insert].project(this.nodes[input]);
+
+              // now let it have an input connection
+              var output = Math.floor(Math.random() * insert);
+              this.nodes[output].project(this.nodes[insert]);
+              break;
+            case(1): // layer
+              break;
+            case(2): // neuron
+              break;
+          }
+        }
+        break;
+      case(Mutate.MUTATE_NODES):
+        break;
+    }
+
+  }
+
 
 };

src/evolution.js

@@ -5,7 +5,7 @@ if (module) module.exports = Evolution;
 var Layer   = require('./layer')
 ,   Network = require('./network')
 ,   Trainer = require('./trainer')
-,   methods = require('./methods');
+,   methods = require('./methods/methods.js');
 
 /* Shorten var names */
 var Mutate     = methods.Mutate

src/gynaptic.js

@@ -1,12 +1,12 @@
 var Gynaptic = {
-  Neuron: require('./neuron'),
-  Evolution: require('./evolution'),
-  Trainer: require('./trainer'),
-  Methods: require('./methods'),
-  Layer: require('./layer'),
-  Network: require('./network'),
-  Architect: require('./architect'),
-  Brain: require('./brain')
+  Neuron    : require('./neuron'),
+  Evolution : require('./evolution'),
+  Trainer   : require('./trainer'),
+  Methods   : require('./methods/methods.js'),
+  Layer     : require('./layer'),
+  Network   : require('./network'),
+  Architect : require('./architect'),
+  Brain     : require('./brain')
 };
 
 // CommonJS & AMD

src/layer.js

@@ -4,7 +4,7 @@ if (module) module.exports = Layer;
 /* Import */
 var Neuron  = require('./neuron')
 ,   Network = require('./network')
-,   methods = require('./methods')
+,   methods = require('./methods/methods.js');
 
 /* Shorten var names */
 var Mutate     = methods.Mutate

src/methods/connection.js

@@ -0,0 +1,12 @@
+/*******************************************************************************************
+                                      CONNECTIONS
+*******************************************************************************************/
+
+var Connection = {
+   ALL_TO_ALL : "ALL TO ALL",
+   ONE_TO_ONE : "ONE TO ONE",
+   ALL_TO_ELSE : "ALL TO ELSE"
+ };
+
+ /* Export */
+ if (module) module.exports = Connection;