fixed broken test

vsbuffalo · Feb 8, 2024 · 57035ee · 57035ee
1 parent 685e34b
commit 57035ee
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Showing 3 changed files with 300 additions and 2 deletions.
diff --git a/Cargo.toml b/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "recmap"
-version = "0.1.0"
+version = "0.1.1"
 edition = "2021"
 license = "MIT"
 authors = ["Vince Buffalo <vsbuffalo@gmail.com>"]

diff --git a/src/recmap.rs b/src/recmap.rs
@@ -409,7 +409,7 @@ mod tests {
             "chr2".to_string() => 6004443,
             "chr3".to_string() => 6026894,
         };
-        let rec_map = RecMap::from_hapmap("tests/data/decode_2010_test_map.txt", seqlens).unwrap();
+        let rec_map = RecMap::from_hapmap("tests_data/decode_2010_test_map.txt", seqlens).unwrap();
 
         let dir = tempdir().unwrap();
         let output_path = dir.path().join("output.tsv");

diff --git a/tests_data/decode_2010_test_map.txt b/tests_data/decode_2010_test_map.txt
@@ -0,0 +1,298 @@
+Chromosome	Position(bp)	Rate(cM/Mb)
+chr1	6000669	0.746595
+chr1	6010669	2.023292
+chr1	6020669	1.463050
+chr1	6030669	0.000014
+chr1	6040669	3.273815
+chr1	6050669	5.538514
+chr1	6060669	5.676241
+chr1	6070669	5.214263
+chr1	6080669	3.524091
+chr1	6090669	2.562367
+chr1	6100669	0.000000
+chr1	6110669	0.000000
+chr1	6120669	0.560013
+chr1	6130669	7.912390
+chr1	6140669	7.182596
+chr1	6150669	0.000030
+chr1	6160669	0.179823
+chr1	6170669	0.984741
+chr1	6180669	6.985398
+chr1	6190669	1.181489
+chr1	6200669	0.980045
+chr1	6210669	0.000001
+chr1	6220669	0.000005
+chr1	6230669	0.000002
+chr1	6240669	0.195617
+chr1	6250669	10.79933
+chr1	6260669	4.923994
+chr1	6270669	1.010404
+chr1	6280669	0.000000
+chr1	6290669	0.130776
+chr1	6300669	0.223054
+chr1	6310669	0.223054
+chr1	6320669	0.103122
+chr1	6330669	0.001269
+chr1	6340669	0.001269
+chr1	6350669	0.001269
+chr1	6360669	0.001269
+chr1	6370669	0.001269
+chr1	6380669	0.001323
+chr1	6390669	0.001615
+chr1	6400669	0.009023
+chr1	6410669	0.048591
+chr1	6420669	3.311965
+chr1	6430669	3.806940
+chr1	6440669	2.753425
+chr1	6450669	3.987139
+chr1	6460669	2.142400
+chr1	6470669	2.211751
+chr1	6480669	2.826066
+chr1	6490669	0.722332
+chr1	6500669	3.262397
+chr1	6510669	0.888024
+chr1	6520669	0.000000
+chr1	6530669	0.000000
+chr1	6540669	0.000000
+chr1	6550669	0.000000
+chr1	6560669	1.188989
+chr1	6570669	2.617326
+chr1	6580669	0.000000
+chr1	6590669	0.000000
+chr1	6600669	0.000000
+chr1	6610669	0.000000
+chr1	6620669	0.000000
+chr1	6630669	0.000000
+chr1	6640669	0.031676
+chr1	6650669	0.041180
+chr1	6660669	0.047496
+chr1	6670669	0.060266
+chr1	6680669	0.301481
+chr1	6690669	0.360697
+chr1	6700669	0.000000
+chr1	6710669	0.000000
+chr1	6720669	2.421823
+chr1	6730669	0.000000
+chr1	6740669	0.000000
+chr1	6750669	0.030975
+chr1	6760669	0.267138
+chr1	6770669	0.128701
+chr1	6780669	0.070365
+chr1	6790669	0.070365
+chr1	6800669	0.005981
+chr1	6810669	0.000000
+chr1	6820669	0.000000
+chr1	6830669	0.000000
+chr1	6840669	0.000000
+chr1	6850669	0.000000
+chr1	6860669	0.000000
+chr1	6870669	0.000000
+chr1	6880669	0.000000
+chr1	6890669	0.000181
+chr1	6900669	1.872161
+chr1	6910669	0.147155
+chr1	6920669	1.271715
+chr1	6930669	1.271715
+chr1	6940669	1.266467
+chr1	6950669	1.447295
+chr1	6960669	0.594136
+chr1	6970669	0.435450
+chr1	6980669	0.175606
+chr2	5024443	1.552271
+chr2	5034443	1.552271
+chr2	5044443	1.552271
+chr2	5054443	1.552271
+chr2	5064443	1.552271
+chr2	5074443	1.552271
+chr2	5084443	0.793999
+chr2	5094443	0.000025
+chr2	5104443	0.000017
+chr2	5114443	0.000017
+chr2	5124443	0.000002
+chr2	5134443	0.000000
+chr2	5144443	0.243856
+chr2	5154443	1.918936
+chr2	5164443	0.000000
+chr2	5174443	1.885490
+chr2	5184443	5.371328
+chr2	5194443	6.192948
+chr2	5204443	1.239209
+chr2	5214443	0.472705
+chr2	5224443	1.336251
+chr2	5234443	1.574374
+chr2	5244443	1.574374
+chr2	5254443	1.574374
+chr2	5264443	7.299673
+chr2	5274443	0.000000
+chr2	5284443	0.406670
+chr2	5294443	1.006111
+chr2	5304443	1.297654
+chr2	5314443	2.326105
+chr2	5324443	0.000000
+chr2	5334443	0.000000
+chr2	5344443	0.000000
+chr2	5354443	0.000000
+chr2	5364443	0.268418
+chr2	5374443	1.079875
+chr2	5384443	1.514287
+chr2	5394443	0.000000
+chr2	5404443	6.137154
+chr2	5414443	6.547622
+chr2	5424443	2.827263
+chr2	5434443	0.435357
+chr2	5444443	11.92755
+chr2	5454443	3.866569
+chr2	5464443	1.685853
+chr2	5474443	4.597484
+chr2	5484443	7.489628
+chr2	5494443	1.458231
+chr2	5504443	3.421633
+chr2	5514443	6.584612
+chr2	5524443	2.258016
+chr2	5534443	1.284206
+chr2	5544443	2.745920
+chr2	5554443	0.810027
+chr2	5564443	2.133874
+chr2	5574443	0.000000
+chr2	5584443	0.000000
+chr2	5594443	1.063204
+chr2	5604443	0.000000
+chr2	5614443	3.913138
+chr2	5624443	16.33110
+chr2	5634443	2.170685
+chr2	5644443	1.164291
+chr2	5654443	0.060685
+chr2	5664443	0.000000
+chr2	5674443	0.758489
+chr2	5684443	0.856566
+chr2	5694443	0.856566
+chr2	5704443	0.856566
+chr2	5714443	0.856566
+chr2	5724443	1.757837
+chr2	5734443	8.394131
+chr2	5744443	0.428384
+chr2	5754443	1.856722
+chr2	5764443	0.000000
+chr2	5774443	0.000000
+chr2	5784443	2.413897
+chr2	5794443	0.307011
+chr2	5804443	0.631861
+chr2	5814443	2.669932
+chr2	5824443	0.000000
+chr2	5834443	0.179944
+chr2	5844443	0.648664
+chr2	5854443	0.000000
+chr2	5864443	0.745850
+chr2	5874443	1.189364
+chr2	5884443	0.501317
+chr2	5894443	0.570182
+chr2	5904443	7.277858
+chr2	5914443	0.000477
+chr2	5924443	7.710440
+chr2	5934443	0.000031
+chr2	5944443	0.000000
+chr2	5954443	0.000000
+chr2	5964443	0.742661
+chr2	5974443	1.179453
+chr2	5984443	0.002240
+chr2	5994443	4.307672
+chr2	6004443	0.000000
+chr3	5046894	10.64411
+chr3	5056894	9.986328
+chr3	5066894	3.602384
+chr3	5076894	2.460953
+chr3	5086894	26.27610
+chr3	5096894	2.504649
+chr3	5106894	1.804089
+chr3	5116894	2.835807
+chr3	5126894	0.733710
+chr3	5136894	0.733710
+chr3	5146894	0.672918
+chr3	5156894	0.108278
+chr3	5166894	0.108278
+chr3	5176894	0.289002
+chr3	5186894	0.301463
+chr3	5196894	0.301463
+chr3	5206894	0.156158
+chr3	5216894	0.037662
+chr3	5226894	0.215457
+chr3	5236894	2.083384
+chr3	5246894	10.65443
+chr3	5256894	4.429434
+chr3	5266894	4.522011
+chr3	5276894	6.500327
+chr3	5286894	2.226008
+chr3	5296894	0.325378
+chr3	5306894	0.776495
+chr3	5316894	0.027397
+chr3	5326894	1.915761
+chr3	5336894	0.084375
+chr3	5346894	7.163210
+chr3	5356894	2.707681
+chr3	5366894	0.446767
+chr3	5376894	0.000000
+chr3	5386894	8.246309
+chr3	5396894	4.143360
+chr3	5406894	0.000000
+chr3	5416894	0.000000
+chr3	5426894	2.452359
+chr3	5436894	1.245422
+chr3	5446894	1.255122
+chr3	5456894	1.786497
+chr3	5466894	3.234763
+chr3	5476894	24.07315
+chr3	5486894	0.000022
+chr3	5496894	0.000000
+chr3	5506894	0.000000
+chr3	5516894	1.972394
+chr3	5526894	1.032322
+chr3	5536894	4.096099
+chr3	5546894	7.020589
+chr3	5556894	3.275924
+chr3	5566894	2.900866
+chr3	5576894	1.017106
+chr3	5586894	3.405825
+chr3	5596894	3.722481
+chr3	5606894	0.000000
+chr3	5616894	0.000000
+chr3	5626894	0.000000
+chr3	5636894	0.000000
+chr3	5646894	0.000000
+chr3	5656894	0.000000
+chr3	5666894	1.837783
+chr3	5676894	1.810645
+chr3	5686894	0.140680
+chr3	5696894	0.000023
+chr3	5706894	2.552364
+chr3	5716894	2.024765
+chr3	5726894	0.177264
+chr3	5736894	0.819907
+chr3	5746894	0.512524
+chr3	5756894	0.000000
+chr3	5766894	0.417875
+chr3	5776894	43.05484
+chr3	5786894	1.881974
+chr3	5796894	2.214665
+chr3	5806894	2.131870
+chr3	5816894	0.000000
+chr3	5826894	0.710425
+chr3	5836894	0.000000
+chr3	5846894	0.000000
+chr3	5856894	0.000000
+chr3	5866894	3.189427
+chr3	5876894	1.015402
+chr3	5886894	0.192219
+chr3	5896894	0.036432
+chr3	5906894	2.620555
+chr3	5916894	2.050218
+chr3	5926894	0.000019
+chr3	5936894	0.000051
+chr3	5946894	0.000003
+chr3	5956894	0.000000
+chr3	5966894	0.000000
+chr3	5976894	0.682530
+chr3	5986894	1.110437
+chr3	5996894	0.640657
+chr3	6006894	0.000000
+chr3	6016894	0.000000
+chr3	6026894	0.000000