From ed889a0bac8e6ffc293db11b8ae76468369ffd40 Mon Sep 17 00:00:00 2001
From: Mark Keller <7525285+keller-mark@users.noreply.github.com>
Date: Thu, 20 Jun 2024 14:46:42 -0400
Subject: [PATCH] to_dense

---
 R/bioc_to_zarr.R | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/R/bioc_to_zarr.R b/R/bioc_to_zarr.R
index 157dd2e..9c08ee9 100644
--- a/R/bioc_to_zarr.R
+++ b/R/bioc_to_zarr.R
@@ -19,7 +19,7 @@ sce_to_anndata_zarr <- function(sce_obj, out_path) {
   }
   
   store <- pizzarr::DirectoryStore$new(out_path)
-  anndataR::from_SingleCellExperiment(sce_obj, "ZarrAnnData", store = store)
+  anndataR::from_SingleCellExperiment(sce_obj, "ZarrAnnData", store = store, to_dense = TRUE)
   return(TRUE)
 }