Update param

vitessce · Jun 20, 2024 · 3000b4d · 3000b4d
1 parent ed889a0
commit 3000b4d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/bioc_to_zarr.R b/R/bioc_to_zarr.R
@@ -9,7 +9,7 @@
 #' obj <- get_sce_obj()
 #' sce_to_anndata_zarr(obj, out_path = "data/sce.zarr")
 #' @importFrom SingleCellExperiment reducedDims reducedDims<-
-sce_to_anndata_zarr <- function(sce_obj, out_path) {
+sce_to_anndata_zarr <- function(sce_obj, out_path, to_dense = TRUE) {
   obsm_keys <- names(as.list(reducedDims(sce_obj)))
   for(obsm_key in obsm_keys) {
     # If there are column names, then the obsm element will be stored as a data.frame,
@@ -19,7 +19,7 @@ sce_to_anndata_zarr <- function(sce_obj, out_path) {
   }
 
   store <- pizzarr::DirectoryStore$new(out_path)
-  anndataR::from_SingleCellExperiment(sce_obj, "ZarrAnnData", store = store, to_dense = TRUE)
+  anndataR::from_SingleCellExperiment(sce_obj, "ZarrAnnData", store = store, to_dense = to_dense)
   return(TRUE)
 }