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PFHub CLI tool#1510

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wd15 wants to merge 71 commits intousnistgov:masterusnistgov/pfhub:masterfrom wd15:upload-notebookwd15/pfhub:upload-notebookCopy head branch name to clipboard

Commits

Commits on Mar 27, 2023

• build(nix): add zip and unzip

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• build(nix): add jupyter to shell-surge.nix

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• notebooks: move upload.md and make a notebook

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• feat: implement conversion of meta to zenodo

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• data: templates for meta -> zenodo

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Commits on Mar 31, 2023

• refactor: make convert.py functional style

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Commits on Apr 10, 2023

• add intermediate changes

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Commits on Aug 4, 2023

• build(nix): switch to using flakes

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• style: clean for black and pylint

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• ci(github): update for nix flakes

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• ci(travis): remove travis ci altogether

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• data: fix broken simulation schema

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• docs: update for nix flakes and docker

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• chore: remove unused apps

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• build(nix): remove all old nix builds

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• chore: remove unused file

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• build(docker): now using flakes to build docker

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• ci: add nix flake checker to tests

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• notebooks: update to work with flakes

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• Merge branch 'flakes' into upload-notebook

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Commits on Aug 5, 2023

• build(nix): bug fix

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• style: clean for linters

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Commits on Aug 7, 2023

• feat: add first version of command line tool

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• build(nix): add zenodo_client

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• build: dependencies for pip installed environment

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• docs: pypi release instructions

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• docs: move release docs into python-pfhub

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Commits on Aug 8, 2023

• build(nix): fix nix develop in base directory

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• tests: fix tests for older version of dotwiz

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• build(python): use correct file name for cli

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• docs: remove duplicate release notes

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• tests: don't test coverage in versioneer files

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• ci: test pfhub with conda

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• ci: debug

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• ci: debug

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• ci: debug

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• build(python): specify dotwiz version

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Commits on Aug 10, 2023

• build(nix): add click-params

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• feat: download command for cli

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• build(python): add click-params

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• build(nix): include pykwalify

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• feat: add convert-to-zenodo in cli

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Commits on Aug 11, 2023

• data: add meta.yaml schema for cli tool

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• feat: add convert-to-zenodo to cli tool

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• build(python): add missing pykwalify package

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• ci: add required packages

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• feat: add option to run the tests to cli tool

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• ci: run the cli tests outside of the working copy

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Commits on Aug 12, 2023

• feat: include schema validation in cli

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• build(python): add linkml package

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• data: add schemas and yaml data for checking

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• build(nix): pip install linkml

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• build(nix): add linkml as pip install for now

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• fix: use correct path to yaml schema

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• data: add schema for pfhub yaml files

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Commits on Aug 13, 2023

• build(nix): base flake.nix was failing on pylint

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• ci: trigger

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• ci: make _data/python-pfhub flake check first

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• build(nix): update flake.lock

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• ci: remove duplicate nix installations

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• build(nix): stop pip checking versions

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• build(nix): trying to make nix work

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• ci: use nix develop in place of nix build

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• build(pip): pin greenlet

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Commits on Aug 14, 2023

• refactor: download gets records from PFHub only

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• feat: implement convert-to-old command

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• data: implement convert-to-old command

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• feat: implement convert-to-old command

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Commits on Aug 15, 2023

• test: fix broken test

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Commits on Aug 16, 2023

• style: add stub commands and improve docs

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Commits on Oct 26, 2023

• Fix data formatting

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