jenkins-R-dist.sh

#!/bin/sh

# see https://r-pkgs.org/

#
# set DATE
#
if [ -z "$DATE" ]; then
  DATE=$(date "+%x")
fi
DATE=$(date -d $DATE --rfc-3339=date)
export DATE

#
# set VER
#
if [ -z "$VER" ]; then
  ###wget https://cran.r-project.org/package=phreeqc -O index.xhtml 2> /dev/null
  ###VER=`xmlstarlet sel -t -m "/_:html/_:body/_:table[1]/_:tr[1]/_:td[2]" -v . -n index.xhtml 2> /dev/null`
  VER=$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/next_ver.sh | sh)
  ver_major=$(echo "$VER" | cut -d '.' -f 1)
  ver_minor=$(echo "$VER" | cut -d '.' -f 2)
  ver_patch=$(echo "$VER" | cut -d '.' -f 3)
else
  ver_major=$(echo "$VER" | cut -d '.' -f 1)
  ver_minor=$(echo "$VER" | cut -d '.' -f 2)
  ver_patch=$(echo "$VER" | cut -d '.' -f 3)
fi
if [ -z "$ver_major" ] || [ -z "$ver_minor" ] || [ -z "$ver_patch" ]; then
  exit 1
fi
VER="${ver_major}.${ver_minor}.${ver_patch}"
export VER

#
# set REL
#
# curl https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/ver.py -o ver.py
# HEAD=$(python3 ver.py)
# if [ -z "$REL" ]; then
#   REL="$HEAD"
# fi
REL=$(curl -sS https://raw.githubusercontent.com/usgs-coupled/phreeqc-version/main/rel.py | python3)
export REL

# sed files
/bin/sh jenkins-dist.sh -v ${VER} -r ${REL} -d ${DATE} -pr ${TAG}
cd R
make VERSION=${VER} RELEASE_DATE=${DATE} check