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Add LaTeX listings package and railsetup.
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Papers/Main/root.tex

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\usepackage{isabelle,isabellesym}
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\usepackage{amssymb}
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\usepackage{tikz-cd}
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\usepackage{listings}
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\usepackage{mathpartir}
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% further packages required for unusual symbols (see also
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\newcommand{\isamarkupsnipbegin}[1]{\Snip{#1}}
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\newcommand{\isamarkupsnipend}[1]{\EndSnip{#1}}
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\usepackage{railsetup}
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\newcommand{\indexdef}[3]{}
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\begin{document}
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latex/root.tex

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\usepackage{amssymb,amsmath}
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\usepackage{mathpartir}
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\usepackage{tikz-cd}
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\usepackage{listings}
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% force input encoding to utf8 since this is what most machines use.
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% and T1 font encoding so Guillemets are allowed etc.

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