DESCRIPTION

Package: Spaniel
Type: Package
Title: Spatial Transcriptomics Analysis
Version: 1.5.1
Authors@R: 
    c(person("Rachel", "Queen", role = c("aut", "cre"), email = "rachel.queen@newcastle.ac.uk"))
Description: Spaniel includes a series of tools to aid the quality control and 
    analysis of Spatial Transcriptomics data. Spaniel can import data from either the 
    original Spatial Transcriptomics system or 10X Visium technology. 
    The package contains functions to create a SingleCellExperiment Seurat object  and 
    provides a method of loading a histologial image into R. The spanielPlot function 
    allows visualisation of metrics contained within the S4 object overlaid onto the 
    image of the tissue. 
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.0)
Imports: Seurat,
         SingleCellExperiment,
         SummarizedExperiment,
         dplyr,
         methods,
         ggplot2,
         scater (>= 1.13),
         scran,
         igraph,
         shiny,
         jpeg,
         magrittr,
         utils,
         S4Vectors,
         DropletUtils,
         jsonlite,
         png
Suggests: 
    knitr,
    rmarkdown,
    testthat,
    devtools
VignetteBuilder: knitr
biocViews: SingleCell, RNASeq, QualityControl, 
            Preprocessing, Normalization, Visualization, Transcriptomics, 
            GeneExpression, Sequencing, Software, DataImport,
            DataRepresentation, Infrastructure, Coverage, Clustering
Collate: 
    'utilities.R'
    'addClusterCols.R'
    'addCoordinates.R'
    'createObjects.R'
    'parseImage.R'
    'removeSpots.R'
    'spanielPlotInternals.R'
    'spanielPlot.R'
    'shinySpaniel.R'
    'tenX.R'
RoxygenNote: 7.1.1