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@bmesuere bmesuere released this 31 Jul 10:53
· 2712 commits to develop since this release
3.0
2641429
  • Redesign
  • Use Assemblies instead of Bioprojects as data source for the proteomes
  • Add command line documentation
  • Add auto-resume for a previous peptidome analysis
  • Add draft genomes to the peptidome analysis
  • Add type strain info to the proteomes
  • Add new table based method of selecting proteomes
  • Add Shift + click to expand the treeview, both on the TPA and MPA results page.
  • Add autoprefixer for css
  • Add notifications to indicate progress
  • Add protein names to the tryptic peptide analysis results
  • Add protein names to the API output
  • Add the possibility to leave an email address on encountering an error
  • Add the UniProt version in the footer
  • Add rewritten of the uniprot parser using make files and berkeley DB
  • Add copy to clipboard button for Tryptic Peptide Analysis
  • Add open in UniProt button for Tryptic Peptide Analysis
  • Remove drag and drop for proteome selection
  • Refactored the JavaScript code to use promises were possible
  • Fix an issue where the names of "My proteomes" were incorrectly abbreviated in some cases
  • Fix an issue where IndexedDB was broken in Safari
  • Fix an issue where the input order was not preserved for the taxonomy API call
  • Fix a bug where the my proteomes popover wouldn't open once a pancore popover was shown
  • Fix a bug where the pancore popover was still present after a remove all
  • Fix an issue where text was selected during drag-to-reorder in the pancore graph
  • Fix an issue where a few JavaScript errors were shown when loading the TPA tree
  • Fix an issue where the application crashed when a user submitted non-ascii characters in the multi-peptide analysis
  • Update ruby to 2.2.2
  • Update rails to 4.2.3
  • Update D3 to 3.5.5
  • Update bootstrap to 3.3.5
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