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@uio-bmi

Centre for Bioinformatics, University of Oslo

The hub of bioinformatics and computational biology at the University of Oslo

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  1. immuneML immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    Python 64 30

  2. compairr compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 26 5

  3. graph_peak_caller graph_peak_caller Public

    ChIP-seq peak caller for reads mapped to a graph-based reference genome

    Python 21 9

Repositories

Showing 10 of 83 repositories
  • immuneML Public

    immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

    uio-bmi/immuneML’s past year of commit activity
    Python 64 AGPL-3.0 30 0 0 Updated Jan 24, 2025
  • dagsim Public

    A framework and specification language for simulating data based on graphical models

    uio-bmi/dagsim’s past year of commit activity
    Python 18 AGPL-3.0 4 1 0 Updated Jan 22, 2025
  • localega-tsd-proxy Public archive
    uio-bmi/localega-tsd-proxy’s past year of commit activity
    Java 0 MIT 0 6 1 Updated Jan 22, 2025
  • mq-interceptor Public archive

    RabbitMQ interceptor for LocalEGA

    uio-bmi/mq-interceptor’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Jan 22, 2025
  • crypt4gh Public archive

    Crypt4GH standard implementation

    uio-bmi/crypt4gh’s past year of commit activity
    Java 2 MIT 6 2 6 Updated Jan 22, 2025
  • pilot_data_analysis_AIRR_ML_BM_2025 Public

    Scripts enabling the reproducibility of pilot data analysis carried out for AIRR-ML-BM-2025

    uio-bmi/pilot_data_analysis_AIRR_ML_BM_2025’s past year of commit activity
    Python 0 0 0 0 Updated Jan 14, 2025
  • immuneml_tools Public

    Galaxy tools using the immuneML conda package.

    uio-bmi/immuneml_tools’s past year of commit activity
    Python 1 0 0 0 Updated Jan 9, 2025
  • StarSignDNA Public
    uio-bmi/StarSignDNA’s past year of commit activity
    Python 3 MIT 1 0 0 Updated Jan 3, 2025
  • ligo Public

    LIgO is a tool for simulation of adaptive immune receptors and repertoires.

    uio-bmi/ligo’s past year of commit activity
    Python 0 AGPL-3.0 2 0 0 Updated Dec 2, 2024
  • SimCal Public

    Simulation Calibration codebase for evaluating ML pipelines between real and learned worlds

    uio-bmi/SimCal’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 22, 2024
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