diff --git a/CHANGELOG.md b/CHANGELOG.md index fc203496..57f7e0bb 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,19 +4,21 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). - ## [Unreleased] +## [8.0.0] - 2024-01-29 + ### Changed +- `Strelka2` retry triggered by error code `1` - Pass reference index to `SomaticSniper` processes +- Use external `indexFile` function +- Update submodules - Update GATK `v4.4.0.0` to `v4.5.0.0` +- add `F8.config` ## [8.0.0-rc.1] - 2023-12-13 ### Changed -- `Strelka2` retry triggered by error code `1` -- Use external `indexFile` function -- Update submodules - Sample names sanitized for all output - Sample names parsed from input BAMs - Update `MuSE` to `v2.0.4` diff --git a/README.md b/README.md index 1d54580d..6c9f94c2 100644 --- a/README.md +++ b/README.md @@ -366,7 +366,7 @@ pipeline-call-sSNV is licensed under the GNU General Public License version 2. S This pipeline performs somatic SNV calling on a pair of normal/tumor BAMs, utilizing SomaticSniper, Strelka2, Mutect2 and MuSE. -Copyright (C) 2020-2023 University of California Los Angeles ("Boutros Lab") All rights reserved. +Copyright (C) 2020-2024 University of California Los Angeles ("Boutros Lab") All rights reserved. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. diff --git a/nextflow.config b/nextflow.config index ae8c6a9b..13d0d8db 100644 --- a/nextflow.config +++ b/nextflow.config @@ -9,6 +9,6 @@ manifest { nextflowVersion = '>=20.07.1' author = 'Yuan Zhe (Caden) Bugh, Mao Tian, Sorel Fitz-Gibbon' homePage = 'https://github.com/uclahs-cds/pipeline-call-sSNV' - version = '8.0.0-rc.1' + version = '8.0.0' name = 'call-sSNV' }