summarizeFasta error with combination sources

[lydiayliu]

as mentioned in https://github.com/uclahs-cds/project-MissingPeptides-Method/issues/254#issuecomment-1811354683

summarizeFasta doesn't work with combination sources it seems? I'm getting this error

Traceback (most recent call last):
  File "/usr/local/bin/moPepGen", line 8, in <module>
    sys.exit(main())
  File "/usr/local/lib/python3.8/site-packages/moPepGen/cli/__main__.py", line 92, in main
    args.func(args)
  File "/usr/local/lib/python3.8/site-packages/moPepGen/cli/summarize_fasta.py", line 221, in summarize_fasta
    summarizer.write_summary_table(handle)
  File "/usr/local/lib/python3.8/site-packages/moPepGen/aa/PeptidePoolSummarizer.py", line 313, in write_summary_table
    if self.contains_exclusive_sources(comb):
  File "/usr/local/lib/python3.8/site-packages/moPepGen/aa/PeptidePoolSummarizer.py", line 275, in contains_exclusive_sources
    parsers = self.get_parsers_from_source(source)
  File "/usr/local/lib/python3.8/site-packages/moPepGen/aa/PeptidePoolSummarizer.py", line 206, in get_parsers_from_source
    parser = self.source_parser_map[s]
KeyError: frozenset({'Variant', 'Alt'})

The fastas are in /hot/project/method/AlgorithmDevelopment/ALGO-000074-moPepGen/CPCGENE/processed/noncanonical-database/call-nonCanonicalPeptide/2023-11-14_split/pipeline-meta-call-NonCanonicalPeptide-0.0.1/CPCG0100/call-NonCanonicalPeptide-1.0.0/CPCG0100/moPepGen-dev/output/split/

My command is

docker run -u $(id -u):$(id -g) --rm -v /hot/:/hot/ ghcr.io/uclahs-cds/mopepgen:dev \
moPepGen summarizeFasta \
    --variant-peptides ${d} \
    --gvf ${c} \
    --index-dir /hot/project/method/AlgorithmDevelopment/ALGO-000074-moPepGen/ref/GRCh38-EBI-GENCODE34/index/ \
    --group-source Alt:SECT,CodonReassign Variant:gSNP,gIndel,sSNV,sIndel,Fusion,altSplice,RNAEdit \
    --order-source Variant,Alt,Variant-Alt,Noncoding,Noncoding-Variant,Noncoding-Alt,Noncoding-Variant-Alt,circRNA,circRNA-Variant,circRNA-Alt,circRNA-Variant-Alt,Noncoding-circRNA,Noncoding-circRNA-Variant,Noncoding-circRNA-Alt,Noncoding-circRNA-Variant-Alt \
    --output-path ${d}.group.txt \

[lydiayliu]

Should be address in #828