Code

develop bed conversion#4

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Merged

alkaZeltser merged 19 commits intomainuclahs-cds/package-ApplyPolygenicScore:mainfrom nzeltser-develop-bed-conversionuclahs-cds/package-ApplyPolygenicScore:nzeltser-develop-bed-conversionCopy head branch name to clipboardJan 9, 2024

+813

Commits

Commits on Dec 26, 2023

• add BED conversion and BED merge functions

  alkaZeltser

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  f7587f8

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Commits on Dec 27, 2023

• add slop option

  alkaZeltser

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Commits on Jan 6, 2024

• Merge branch 'nzeltser-develop-import-functions' into nzeltser-develop-bed-conversion

  alkaZeltser

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  072451c

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• clean up bed conversion

  alkaZeltser

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  e82bbe0

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• write tests for pgs to bed conversion

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  3353128

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Commits on Jan 8, 2024

• Merge branch 'main' into nzeltser-develop-bed-conversion

  alkaZeltser

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  9f29663

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• update to more descriptive input names

  alkaZeltser

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• start test file for mergeing bed files

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Commits on Jan 9, 2024

• add option to select annotation column

  alkaZeltser

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  176f5f3

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• tests for merge.pgs.bed output format

  alkaZeltser

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  6544a7d

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• add tests for slop and real data

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  a351084

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• fix annotation conditioning

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  988dbcf

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• add test data

  alkaZeltser

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  76fdb93

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• add script for generating test data

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  bd82886

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• update documentation

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  5dc7f40

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• lintr fixes

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  a44cf34

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• lintr fixes

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  8aded48

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• add slop input check

  alkaZeltser

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  e976941

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• formatting fixes

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  4ef1612

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