From 2fd73a71f4d866af7deb77e3bac38dfb069c5055 Mon Sep 17 00:00:00 2001
From: pieterlukasse <pieterlukasse@gmail.com>
Date: Wed, 19 Feb 2025 21:26:48 +0100
Subject: [PATCH 1/4] feat: add new cohort-characterization Atlas branch on QA
 (#3156)

---
 qa-mickey.planx-pla.net/manifest.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/qa-mickey.planx-pla.net/manifest.json b/qa-mickey.planx-pla.net/manifest.json
index f34a9cd87..4a9d00169 100644
--- a/qa-mickey.planx-pla.net/manifest.json
+++ b/qa-mickey.planx-pla.net/manifest.json
@@ -20,7 +20,7 @@
     "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2025.01",
     "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2025.01",
     "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2025.01",
-    "ohdsi-atlas": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ohdsi-atlas:feat_enable_cohort_characterization",
+    "ohdsi-atlas": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ohdsi-atlas:fix_remove_unnecessary_parts_cohort_characterization_508",
     "ohdsi-webapi": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ohdsi-webapi:2.15.0-DEV",
     "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2025.01",
     "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:feat_add_transformation_and_filters_to_remaining_frontend_parts",

From 96885ae8b7b0386240b4db8af1d5eec5162742a5 Mon Sep 17 00:00:00 2001
From: Jian <52763034+tianj7@users.noreply.github.com>
Date: Thu, 20 Feb 2025 11:57:52 -0600
Subject: [PATCH 2/4] Update manifest.json

---
 qa-mickey.planx-pla.net/manifest.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/qa-mickey.planx-pla.net/manifest.json b/qa-mickey.planx-pla.net/manifest.json
index 4a9d00169..d05d904cd 100644
--- a/qa-mickey.planx-pla.net/manifest.json
+++ b/qa-mickey.planx-pla.net/manifest.json
@@ -20,7 +20,7 @@
     "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2025.01",
     "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2025.01",
     "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2025.01",
-    "ohdsi-atlas": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ohdsi-atlas:fix_remove_unnecessary_parts_cohort_characterization_508",
+    "ohdsi-atlas": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ohdsi-atlas:feat_VADC-1600",
     "ohdsi-webapi": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ohdsi-webapi:2.15.0-DEV",
     "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2025.01",
     "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:feat_add_transformation_and_filters_to_remaining_frontend_parts",

From a9b241aa0ad9d8ed435012b5e98f6c0958647fb5 Mon Sep 17 00:00:00 2001
From: J Maxwell <jmontmaxwell@uchicago.edu>
Date: Thu, 20 Feb 2025 14:13:20 -0600
Subject: [PATCH 3/4] remove R Studio workspace

---
 .../manifests/hatchery/hatchery.json             | 16 ----------------
 1 file changed, 16 deletions(-)

diff --git a/qa-jcoin.planx-pla.net/manifests/hatchery/hatchery.json b/qa-jcoin.planx-pla.net/manifests/hatchery/hatchery.json
index 502767595..bc950f766 100644
--- a/qa-jcoin.planx-pla.net/manifests/hatchery/hatchery.json
+++ b/qa-jcoin.planx-pla.net/manifests/hatchery/hatchery.json
@@ -25,22 +25,6 @@
     ]
   },
   "containers": [
-    {
-      "target-port": 8787,
-      "cpu-limit": "1.0",
-      "memory-limit": "1024Mi",
-      "name": "RStudio 4.1.0",
-      "image": "quay.io/cdis/rstudio4.1:rstudio4.1-0.1.0",
-      "env": {
-        "DISABLE_AUTH": "true"
-      },
-      "args": [],
-      "path-rewrite": "/",
-      "use-tls": "false",
-      "ready-probe": "/",
-      "user-volume-location": "/home/rstudio/pd",
-      "fs-gid": 100
-    },
     {
       "target-port": 8888,
       "cpu-limit": "1.0",

From fa5018c0691b80996dce72d66f6db39c62ae2eb1 Mon Sep 17 00:00:00 2001
From: Mingfei Shao <2475897+mfshao@users.noreply.github.com>
Date: Thu, 20 Feb 2025 14:36:03 -0600
Subject: [PATCH 4/4] Update manifest.json (#3159)

---
 qa-heal.planx-pla.net/manifest.json | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/qa-heal.planx-pla.net/manifest.json b/qa-heal.planx-pla.net/manifest.json
index 8b6b1e50b..bac8030fe 100644
--- a/qa-heal.planx-pla.net/manifest.json
+++ b/qa-heal.planx-pla.net/manifest.json
@@ -76,7 +76,7 @@
       "activeDeadlineSeconds": 600,
       "container": {
         "name": "job-task",
-        "image": "quay.io/cdis/batch-export:2025.01",
+        "image": "quay.io/cdis/batch-export:5.0.1",
         "pull_policy": "Always",
         "labels": {
           "internet": "yes"