Skip to content

Commit

Permalink
Merge pull request #3151 from uc-cdis/update-VADC-email
Browse files Browse the repository at this point in the history
Update vadc email to vadc-support@gen3.org
  • Loading branch information
m0nhawk authored Feb 17, 2025
2 parents 45ff14f + c69e4c8 commit c2d8191
Show file tree
Hide file tree
Showing 3 changed files with 11 additions and 11 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -38,7 +38,7 @@ Clicking on the VA Data Commons logo in the upper left hand corner of the screen
The button for VA Data Commons Documentation takes you to this page.

### **Email Support**
If you need help, the Email Support button allows you to send a message to our help desk at [vadc@lists.uchicago.edu](mailto:vadc@lists.uchicago.edu). You may expect a response within 2 business days.
If you need help, the Email Support button allows you to send a message to our help desk at [vadc-support@gen3.org](mailto:vadc-support@gen3.org). You may expect a response within 2 business days.


# Data Access and Analysis
Expand Down Expand Up @@ -144,7 +144,7 @@ Cohort size will be displayed under the column “People”. Use View Reports to

The “Export” tab provides a text version of how a cohort was created. Click on the “Export” tab and then on the “Copy to clipboard” to copy the cohort’s information.

We expect that this documentation in addition to the OHDSI tutorials are sufficient for most analyses that users will attempt. If you have any questions, please contact us at [vadc@lists.uchicago.edu](mailto:vadc@lists.uchicago.edu).
We expect that this documentation in addition to the OHDSI tutorials are sufficient for most analyses that users will attempt. If you have any questions, please contact us at [vadc-support@gen3.org](mailto:vadc-support@gen3.org).

## **Gen3 GWAS**
Use this App to perform a high throughput Genome-wide association studies (GWAS) on MVP data using the University of Washington Genesis pipeline. For more information about the Genesis pipeline please refer to the publication ["Genetic association testing using the GENESIS R/Bioconductor package"](https://doi.org/10.1093/bioinformatics/btz567).
Expand Down Expand Up @@ -287,21 +287,21 @@ A timeout error implies that an internal service was temporarily not available w

#### **Step failed with an uncategorized error**

Many reasons can cause workflows to fail, and some of them may be transient. Please reach out to [vadc@lists.uchicago.edu](mailto:vadc@lists.uchicago.edu) with any further questions. In your message please provide us with the serial name of your workflow and the step in which your GWAS failed (mentioned in your error message). A response should be expected with 2 business days.
Many reasons can cause workflows to fail, and some of them may be transient. Please reach out to [vadc-support@gen3.org](mailto:vadc-support@gen3.org) with any further questions. In your message please provide us with the serial name of your workflow and the step in which your GWAS failed (mentioned in your error message). A response should be expected with 2 business days.

## **MVP Data Dictionary**

The Data Dictionary App connects users to the static MVP data documentation which contains definitions, descriptions, and metadata for the variables and concepts available in the VADC Atlas OHDSI and GWAS apps. This is also available through a link from the VADC Atlas OHSDI page. When selecting data dictionary from the Apps browser, the user will be presented with a button. This button directs the user to an outside tab. Clicking on the MVP Data Dictionary button will automatically launch a popup explaining that the link takes the user away from VADC. Clicking the “OK” button will open the dictionary in a new tab of the user’s browser allowing toggling between the two sites. **Please note- the site can only be accessible within the VA's VPN.**

## **Data Update Disclaimer**

Please note that we are constantly improving the GWAS pipeline. The retry action will re-run your analysis based on the most recent data available in the database and the most recent GWAS pipeline implemented. These may differ from the analysis you ran initially, and these differences might affect the outcome. For these reasons, the retry action is only applicable to failed workflows. If you have any questions, please feel free to contact us via email [vadc@lists.uchicago.edu](mailto:vadc@lists.uchicago.edu).
Please note that we are constantly improving the GWAS pipeline. The retry action will re-run your analysis based on the most recent data available in the database and the most recent GWAS pipeline implemented. These may differ from the analysis you ran initially, and these differences might affect the outcome. For these reasons, the retry action is only applicable to failed workflows. If you have any questions, please feel free to contact us via email [vadc-support@gen3.org](mailto:vadc-support@gen3.org).

# Frequently Asked Questions

## **Where can I find more documentation on the OHDSI Atlas app?**

ATLAS was developed and is maintained by the OHDSI community. Tutorials for the ATLAS tool can be found [here](https://github.com/OHDSI/Atlas/wiki) and the book about the OHDSI can be found [here](https://ohdsi.github.io/TheBookOfOhdsi/). These resources contain a lot of useful information, particularly you might find it useful to read about [Cohort Definition](https://ohdsi.github.io/TheBookOfOhdsi/Cohorts.html#Cohorts). If you need help, please reach out to our help desk at [vadc@lists.uchicago.edu](mailto:vadc@lists.uchicago.edu)
ATLAS was developed and is maintained by the OHDSI community. Tutorials for the ATLAS tool can be found [here](https://github.com/OHDSI/Atlas/wiki) and the book about the OHDSI can be found [here](https://ohdsi.github.io/TheBookOfOhdsi/). These resources contain a lot of useful information, particularly you might find it useful to read about [Cohort Definition](https://ohdsi.github.io/TheBookOfOhdsi/Cohorts.html#Cohorts). If you need help, please reach out to our help desk at [vadc-support@gen3.org](mailto:vadc-support@gen3.org)

## **What are harmonized variables?**

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -81,7 +81,7 @@ The button for VA Data Commons Documentation takes you to this page.
~~~~~~~~~~~~~~~~~

If you need help, the Email Support button allows you to send a message
to our help desk at vadc@lists.uchicago.edu. You may expect a response
to our help desk at vadc-support@gen3.org. You may expect a response
within 2 business days.

Data Access and Analysis
Expand Down Expand Up @@ -281,7 +281,7 @@ user as well as other members of the team in the Gen3 GWAS app.

We expect that this documentation in addition to the OHDSI tutorials are
sufficient for most analyses that users will attempt. If you have any
questions, please contact us at vadc@lists.uchicago.edu.
questions, please contact us at vadc-support@gen3.org.

**Gen3 GWAS**
-------------
Expand Down Expand Up @@ -598,7 +598,7 @@ from the Actions Menu.
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Many reasons can cause workflows to fail, and some of them may be
transient. Please reach out to vadc@lists.uchicago.edu with any further
transient. Please reach out to vadc-support@gen3.org with any further
questions. In your message please provide us with the serial name of
your workflow and the step in which your GWAS failed (mentioned in your
error message). A response should be expected with 2 business days.
Expand Down Expand Up @@ -628,7 +628,7 @@ These may differ from the analysis you ran initially, and these
differences might affect the outcome. For these reasons, the retry
action is only applicable to failed workflows. If you have any
questions, please feel free to contact us via email
vadc@lists.uchicago.edu.
vadc-support@gen3.org.

Frequently Asked Questions
==========================
Expand All @@ -644,7 +644,7 @@ These resources contain a lot of useful information, particularly you
might find it useful to read about `Cohort
Definition <https://ohdsi.github.io/TheBookOfOhdsi/Cohorts.html#Cohorts>`__.
If you need help, please reach out to our help desk at
vadc@lists.uchicago.edu
vadc-support@gen3.org

**What are harmonized variables?**
----------------------------------
Expand Down
2 changes: 1 addition & 1 deletion qa-mickey.planx-pla.net/portal/gitops.json
Original file line number Diff line number Diff line change
Expand Up @@ -130,7 +130,7 @@
],
"userAccessToSite": {
"enabled": true,
"noAccessMessage": "You are not authorized to access this system. If you have any questions, please contact vadc@lists.uchicago.edu"
"noAccessMessage": "You are not authorized to access this system. If you have any questions, please contact vadc-support@gen3.org"
},
"componentToResourceMapping": {
"Workspace": {
Expand Down

0 comments on commit c2d8191

Please sign in to comment.