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intsnorri/vcf2multialign (press backspace or delete to remove)

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tsnorri/vcf2multialign

Missing dependencies in conda build?

Hi I am attempting to build this on Ubuntu 22.04 using conda-build.sh and I get the following errors: In file included from bgzf_deflate_decompressor.cc:7: ../include/libbio/bgzf/deflate_decompressor.hh:10:10: ...

• rlorigro
·
• Opened 
  on Dec 2, 2024
·
• #6

tsnorri/vcf2multialign

VCF parsing fails for QUAL fields

Hey Tuukka! I m testing vcf2multialign (1.1 6e4c2d5) with the 1000 Genome Project data recalled on the T2T reference. The VCF parsing stops with an error when reading a VCF entry containing a QUAL value ...

bug

• nrizzo
·
• 4
·
• Opened 
  on May 3, 2024
·
• #5

tsnorri/vcf2multialign

Handle VCF inputs without genotype information

enhancement

• tsnorri
·
• Opened 
  on Dec 12, 2023
·
• #4

tsnorri/vcf2multialign

Use the variant graph height as the default number of founder sequences to be generated

Currently the user needs to check the height from vcf2multialign s output.

enhancement

• tsnorri
·
• Opened 
  on Dec 12, 2023
·
• #3

tsnorri/vcf2multialign

Not able to install vcf2multialign ?

HI Unable to install, I installed llvm and clang, suggestions! make -j4 make -C lib/libbio rm -f -rf lib/swift-corelibs-libdispatch/build cd lib/swift-corelibs-libdispatch mkdir build cd build cmake ...

• sunnyEV
·
• 1
·
• Opened 
  on Jan 5, 2020
·
• #2

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