pyproject.toml

[project]
name = "msprime"
authors = [
    {name = "Tskit Developers", email = "admin@tskit.dev"},
]
description = "Simulate genealogical trees and genomic sequence data using population genetic models"
readme = "README.md"
requires-python = ">=3.9"
license = {text = "GNU GPLv3+"}
classifiers = [
    "Programming Language :: C",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3 :: Only",
    "Development Status :: 5 - Production/Stable",
    "Environment :: Other Environment",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)",
    "Operating System :: POSIX",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: Microsoft :: Windows",
    "Topic :: Scientific/Engineering",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]
keywords = [
    "coalescent simulation",
    "population genetics",
    "ms",
    "tree sequence",
    "tskit"
]
dependencies = [
    "numpy>=1.23.5",
    "newick>=1.3.0",
    "tskit>=0.5.2",
    "demes>=0.2"
]
dynamic = ["version"]

[project.urls]
Homepage = "https://tskit.dev/msprime"
Documentation = "https://tskit.dev/msprime/docs/stable"
Changelog = "https://tskit.dev/msprime/docs/stable/CHANGELOG.html"
"Bug Tracker" = "https://github.com/tskit-dev/msprime/issues"
"Source Code" = "https://github.com/tskit-dev/msprime/"

[project.scripts]
mspms = "msprime.cli:mspms_main"
msp = "msprime.cli:msp_main"

[build-system]
requires = [
    "setuptools>=45",
    "setuptools_scm",
    "wheel",
    "numpy>=2"
]
build-backend = "setuptools.build_meta"

[tool.setuptools]
packages = ["msprime"]
include-package-data = true

[tool.setuptools_scm]
write_to = "msprime/_version.py"

[tool.pytest.ini_options]
addopts = "-n 4"
testpaths = ["tests"]
filterwarnings = [
    "ignore:.*usage of `cmp`.*:DeprecationWarning:demes"
]