⚠️ This software is still in early development

perl-biotool

Small pure Perl5 libraries for writing command line bioinformatics tools

Introduction

This is a Github template for my Perl based bioinformatics tools.

• search and replace perl-biotool with the name of your repo
• enable TRAVIS-CI for the repo

Quick Start

% perl-biotool --version
perl-biotool 0.1.2

Installation

Conda

Install Bioconda then:

conda install -c conda-forge -c bioconda -c defaults perl-biotool # COMING SOON

Homebrew

Install Homebrew (Mac OS X) or Linuxbrew (Linux) then:

brew install brewsci/bio/perl-biotool # COMING SOON

Source

This will install the latest version direct from Github. You'll need to add the perl-biotool bin directory to your $PATH, and also ensure all the dependencies are installed.

cd $HOME
git clone https://github.com/tseemann/perl-biotool.git
$HOME/perl-biotool/bin/perl-biotool --help

Dependencies

• perl >= 5.26

License

perl-biotool is free software, released under the GPL 3.0.

Issues

Please submit suggestions and bug reports to the Issue Tracker

Author

Torsten Seemann