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plot_covid19.jl
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plot_covid19.jl
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using Dates, Formatting, Plots, ColorSchemes, WebIO, DataFrames, BenchmarkTools
#import PlotlySave.savefig
plotly()
#using Makie
#include("load_covid19_data.jl")
states_of_interest = ["Virginia","North Carolina","West Virginia","Delaware", "Wisconsin", "Minnesota", "Idaho", "Tennessee", "Alabama", "New York", "New Jersey", "Massachusetts", "Texas","Florida","California","Michigan", "Ohio", "Washington", "Oregon", "Illinois", "Oklahoma", "Maryland", "District of Columbia", "Alaska", "Arizona","Georgia","South Carolina", "Mississippi", "Maine", "Pennsylvania", "Colorado", "New Hampshire", "Iowa", "Vermont","Hawaii", "Montana", "North Dakota", "South Dakota", "Arkansas", "Connecticut", "Indiana", "Kansas", "Kentucky", "Louisiana", "Missouri", "Nebraska", "Nevada", "New Mexico", "Utah", "Wyoming", "Rhode Island", "Puerto Rico"]
#states_of_interest = ["Rhode Island", "Puerto Rico"]
#states_of_interest = ["Puerto Rico",]
strnow = string(Dates.now())
strnow30 = strnow[1:4] * strnow[6:7] * strnow[9:10] * "T" * strnow[12:13] * strnow[15:16] * strnow[18:19]
# extracting county indices with land area and population
cind = findall((countyarea .> 0) .& (cpop .> 0));
reasonable_resolution() = (1440, 900)
tind = 1:length(covid19us[1].confirmed);
t = covid19us[1].time[tind];
#=
# plot a map of confirmed cases
#cval = cconfirmed[cind] ./ (countyarea[cind] .* cpop[cind]);
cval = cconfirmed[cind] ./ cpop[cind];
log10cval = log10.(cval);
#sval = countyarea[cind] .* cpop[cind];
sval = cpop[cind];
log10sval = log10.(sval);
dfconfirmed = DataFrame(LON = clon[cind], LAT = clat[cind], log10POPULATION = log10.(cpop[cind]), log10CONFIRMED = log10.(cconfirmed[cind] ./ cpop[cind]));
#Plotly.scattermapbox(dfconfirmed, lat="LAT", lon="LON", color="log10CONFIRMED", size="log10POPULATION", color_continuous_scale=ColorSchemes.matter.colors, mapbox_style="cart-positron");
scene = Makie.scatter(clon[cind],clat[cind], color = log10cval, markersize = log10sval/10, colormap = ColorSchemes.matter.colors, limits = FRect(-125, 25, 60, 27))
#text!(scene, "©Donglai Gong", textsize = 1, position = (-125, 26))
#cb = colorlegend!(scene, raw = true, camera=campixel!, width = (30,540))
axis = scene[Axis];
axis.names.axisnames = ("Longitude", "Latitude");
axis.names.title = (string(t[end])[1:10] * " Total Confirmed Cases per Capita (log)");
#scene_final = vbox(scene, cb)
Makie.save("/Volumes/GoogleDrive/My Drive/COVID19/" * "covid19_confirmed_map.png", scene)
# plot a map of change in confirmed cases
#cdval = dcconfirmed[cind] ./ (countyarea[cind] .* cpop[cind]);
cdval = dcconfirmed[cind] ./ cpop[cind];
bind = findall(cdval .< 0);
cdval[bind] .= 0;
log10cdval = log10.(cdval);
#sval = countyarea[cind] .* cpop[cind];
sval = cpop[cind];
log10sval = log10.(sval);
scene = Makie.scatter(clon[cind],clat[cind], color = log10cdval, markersize = log10sval/10, colormap = ColorSchemes.matter.colors, limits = FRect(-125, 25, 60, 27))
text!(scene, "©Donglai Gong", textsize = 1, position = (-125, 26))
axis = scene[Axis];
axis.names.axisnames = ("Longitude", "Latitude")
axis.names.title = string(t[end])[1:10] * " New Weekly Cases per Capita (log)"
Makie.save("/Volumes/GoogleDrive/My Drive/COVID19/" * "covid19_delta_confirmed_map.png", scene)
# plot a map of death cases
#cval = cconfirmed[cind] ./ (countyarea[cind] .* cpop[cind]);
cval = cdeath[cind] ./ cpop[cind];
log10cval = log10.(cval);
#sval = countyarea[cind] .* cpop[cind];
sval = cpop[cind];
log10sval = log10.(sval);
scene = Makie.scatter(clon[cind],clat[cind], color = log10cval, markersize = log10sval/10, colormap = ColorSchemes.matter.colors, limits = FRect(-125, 25, 60, 27))
text!(scene, "©Donglai Gong", textsize = 1, position = (-125, 26))
axis = scene[Axis];
axis.names.axisnames = ("Longitude", "Latitude");
axis.names.title = (string(t[end])[1:10] * " Total Death per Capita (log)");
Makie.save("/Volumes/GoogleDrive/My Drive/COVID19/" * "covid19_dealth_map.png", scene)
# plot a map of change in death cases
#cdval = dcconfirmed[cind] ./ (countyarea[cind] .* cpop[cind]);
cdval = dcdeath[cind] ./ cpop[cind];
bind = findall(cdval .< 0);
cdval[bind] .= 0;
log10cdval = log10.(cdval);
#sval = countyarea[cind] .* cpop[cind];
sval = cpop[cind];
log10sval = log10.(sval);
log10svalscl = (log10sval .- minimum(log10sval)) ./ (maximum(log10sval) - minimum(log10sval))
scene = Makie.scatter(clon[cind],clat[cind], color = log10cdval, markersize = log10sval/10, colormap = ColorSchemes.matter.colors, limits = FRect(-125, 25, 60, 27))
text!(scene, "©Donglai Gong", textsize = 1, position = (-125, 26))
axis = scene[Axis];
axis.names.axisnames = ("Longitude", "Latitude")
axis.names.title = string(t[end])[1:10] * " New Weekly Deaths per Capita (log)"
Makie.save("/Volumes/GoogleDrive/My Drive/COVID19/" * "covid19_delta_dealth_map.png", scene)
=#
#Threads.@threads
for j = 1:length(states_of_interest)
#j = 1
#display(Threads.threadid())
display(string(j) * " " * states_of_interest[j])
## calculate per state and total confirmed for US
local tind = 1:length(covid19us[1].confirmed);
local t = covid19us[1].time[tind];
local totalconfirmed = zeros(length(t));
local stateconfirmed = Array{Any}(undef, length(ustate));
local dstateconfirmed = Array{Any}(undef, length(ustate));
local totaldeath = zeros(length(t));
local statedeath = Array{Any}(undef, length(ustate));
local dstatedeath = Array{Any}(undef, length(ustate));
#tind = 1:length(covid19us[1].confirmed);
#t = covid19us[1].time[tind];
#totalconfirmed = zeros(length(t));
#stateconfirmed = Array{Any}(undef, length(ustate));
#dstateconfirmed = Array{Any}(undef, length(ustate));
#totaldeath = zeros(length(t));
#statedeath = Array{Any}(undef, length(ustate));
#dstatedeath = Array{Any}(undef, length(ustate));
for si = 1:length(ustate)
#display(ustate[si])
ind = findall((country .== "US") .& (state .== ustate[si]));
#confirmed = Array{Any}(undef,length(ind));
confirmed = [Float64.(covid19us[ind[i]].confirmed) for i in 1:length(ind)];
death = [Float64.(covid19us[ind[i]].death) for i in 1:length(ind)];
stateconfirmed[si] = Float64.(deepcopy(confirmed[1]));
statedeath[si] = Float64.(deepcopy(death[1]));
for i = 2:length(confirmed)
stateconfirmed[si] .= stateconfirmed[si] .+ confirmed[i];
end
totalconfirmed .= totalconfirmed .+ stateconfirmed[si];
for i = 2:length(death)
statedeath[si] .= statedeath[si] .+ death[i];
end
totaldeath .= totaldeath .+ statedeath[si];
#display(totalconfirmed)
end
## calculate the daily case count for the US and states
local dtotalconfirmed = totalconfirmed[2:end] .- totalconfirmed[1:end-1];
dtotalconfirmed = totalconfirmed[2:end] .- totalconfirmed[1:end-1];
for si = 1:length(stateconfirmed)
dstateconfirmed[si] = stateconfirmed[si][2:end] - stateconfirmed[si][1:end-1];
end
## calculate the daily case count for the US and states
local dtotaldeath = totaldeath[2:end] .- totaldeath[1:end-1];
dtotaldeath = totaldeath[2:end] .- totaldeath[1:end-1];
for si = 1:length(statedeath)
dstatedeath[si] = statedeath[si][2:end] - statedeath[si][1:end-1];
end
## turning 0 to NaN for total counts, this will allow for the use of log10 in y-axis for Plots.jl
local ind0 = findall(totalconfirmed .== 0.0);
totalconfirmed[ind0] .= NaN
local dind0 = findall(dtotalconfirmed .== 0.0);
#dtotalconfirmed[dind0] .= NaN
ind0 = findall(totaldeath .== 0.0);
totaldeath[ind0] .= NaN
dind0 = findall(dtotaldeath .== 0.0);
#dtotaldeath[dind0] .= NaN
local state_of_interest = states_of_interest[j];
## calculate per county case counts for specific state
local ind = findall(state .== state_of_interest);
#ind = findall((state .== state_of_interest) .& (county .!= "Unassigned"));
local population = [Float64.(covid19us[ind[i]].population) for i in 1:length(ind)];
local countyconfirmed = [Float64.(covid19us[ind[i]].confirmed) for i in 1:length(ind)];
local dcountyconfirmed = Array{Any}(undef, length(countyconfirmed));
local dcountyconfirmedpc = Array{Any}(undef, length(countyconfirmed));
local statetotalconfirmed = Float64.(deepcopy(countyconfirmed[1]));
for ci = 2:length(countyconfirmed)
statetotalconfirmed .= statetotalconfirmed .+ countyconfirmed[ci];
end
## calculate the daily case count for specific state and the counties
local dstatetotalconfirmed = Array{Any}(undef, length(statetotalconfirmed)-1);
local dstatetotalconfirmed = statetotalconfirmed[2:end] - statetotalconfirmed[1:end-1];
for ci = 1:length(countyconfirmed)
dcountyconfirmed[ci] = countyconfirmed[ci][2:end] - countyconfirmed[ci][1:end-1];
dcountyconfirmedpc[ci] = (countyconfirmed[ci][2:end] - countyconfirmed[ci][1:end-1]) ./ population[ci] .* 1.0e5;
if population[ci] == 0.0
dcountyconfirmedpc[ci][1] = 0.0;
end
end
## turning 0 to NaN for total counts, this will allow for the use of log10 in y-axis for Plots.jl
ind0 = findall(statetotalconfirmed .== 0);
statetotalconfirmed[ind0] .= NaN;
dind0 = findall(dstatetotalconfirmed .== 0);
#dstatetotalconfirmed[dind0] .= NaN;
local countydeath = [Float64.(covid19us[ind[i]].death) for i in 1:length(ind)];
local dcountydeath = Array{Any}(undef, length(countydeath));
local dcountydeathpc = Array{Any}(undef, length(countydeath));
local statetotaldeath = Float64.(deepcopy(countydeath[1]));
for ci = 2:length(countydeath)
statetotaldeath .= statetotaldeath .+ countydeath[ci];
end
## calculate the daily case count for specific state and the counties
local dstatetotaldeath = Array{Any}(undef, length(statetotaldeath)-1);
local dstatetotaldeath = statetotaldeath[2:end] - statetotaldeath[1:end-1];
for ci = 1:length(countydeath)
dcountydeath[ci] = countydeath[ci][2:end] - countydeath[ci][1:end-1];
dcountydeathpc[ci] = (countydeath[ci][2:end] - countydeath[ci][1:end-1]) ./ population[ci] .* 1.0e5;
if population[ci] == 0.0
dcountydeathpc[ci][1] = 0.0;
end
end
## turning 0 to NaN, this will allow for the use of log10 in y-axis for Plots.jl
ind0 = findall(statetotaldeath .== 0);
statetotaldeath[ind0] .= NaN;
dind0 = findall(dstatetotaldeath .== 0);
#dstatetotaldeath[dind0] .= NaN;
tindstate = 1:length(covid19us[ind[1]].confirmed);
tstate = covid19us[ind[1]].time[tindstate];
#display(statetotaldeath)
# Plot COVID19 data!
#l8out = @layout([a; b; c; d; e])
l8out = @layout([a b; c d; e f; g h; i j])
#l8out = @layout [grid(5,2)]
local totalconfirmed_strfmt = Formatting.format.(totalconfirmed[end], commas=true);
local titlestr = "US - Confirmed COVID-19 Cases " * "as of " * string(t[end])[1:10] * ": " * totalconfirmed_strfmt;
local pCOVID19usa = Plots.plot(t, totalconfirmed, label="USA Total", yscale=:log10, ylim=(1,10^8.0), framestyle=:box, title = titlestr)
for si = 1:length(ustate)
confirmi = stateconfirmed[si];
ind0 = findall(confirmi .== 0);
confirmi[ind0] .= NaN;
if length(ind0) != length(confirmi) # if everything is NaN, don't try to plot
Plots.plot!(t, confirmi, label=ustate[si])
end
end
#Plots.plot(pCOVID19usa, yscale=:log10, ylim=(1,10^7.6) ,framestyle=:box, title="US - Confirmed COVID-19 Cases " * "as of " * string(t[end])[1:10] * ": " * totalconfirmed_strfmt)
#Plots.plot(pCOVID19usa)
local dtotalconfirmed_strfmt = Formatting.format.(dtotalconfirmed[end], commas=true);
local titlestr = "US - Daily New COVID-19 Cases " * "on " * string(t[end])[1:10] * ": " * dtotalconfirmed_strfmt;
#dCOVID19usa = Plots.plot(t[2:end], dtotalconfirmed, m = (2, :auto), label="USA Daily Cases")
local dCOVID19usa = Plots.plot(t[2:end], dtotalconfirmed, label="USA Daily Cases", framestyle=:box, title = titlestr)
for si = 1:length(ustate)
confirmi = dstateconfirmed[si];
#ind0 = findall(confirmi .== 0);
#confirmi[ind0] .= NaN;
#Plots.plot!(t[2:end], confirmi, m = (1, :auto), label=ustate[si])
Plots.plot!(t[2:end], confirmi, label=ustate[si])
end
#Plots.plot(dCOVID19usa, xrotation=20, size=(800,500), legend=:outertopright, framestyle=:box, title="US - Daily Confirmed COVID-19 Cases", line = (:dot, 2), marker = ([:hex :d], 2, 0.8, Plots.stroke(0, :gray)), markerstrokewidth = 0)
#Plots.plot(dCOVID19usa, framestyle=:box, title="US - Daily New COVID-19 Cases " * "on " * string(t[end])[1:10] * ": " * dtotalconfirmed_strfmt, markershape = :circle, markersize = 1, markerstrokestyle = :dot, markerstrokewidth = 0)
#Plots.plot(dCOVID19usa)
local statetotalconfirmed_strfmt = Formatting.format.(statetotalconfirmed[end], commas=true);
local titlestr=state[ind[1]] * " - Confirmed COVID-19 Cases " * "as of " * string(t[end])[1:10] * ": " * statetotalconfirmed_strfmt;
local pCOVID19state = Plots.plot(t, statetotalconfirmed, label=state[ind[1]] * " Total", yscale=:log10, framestyle=:box, title = titlestr);
for i = 1:length(ind)
#display(i)
confirmi = Float64.(deepcopy(covid19us[ind[i]].confirmed[tindstate]));
ind0 = findall(confirmi .== 0.0);
confirmi[ind0] .= NaN;
if length(ind0) != length(confirmi) # if everything is NaN, don't try to plot
Plots.plot!(covid19us[ind[i]].time[tind], confirmi, label=county[ind[i]])
end
end
#Plots.plot(pCOVID19state)
local dstatetotalconfirmed_strfmt = Formatting.format.(dstatetotalconfirmed[end], commas=true);
local titlestr = state[ind[1]] * " - Daily New COVID-19 Cases " * "on " * string(t[end])[1:10] * ": " * dstatetotalconfirmed_strfmt;
local dCOVID19state = Plots.plot(tstate[2:end], dstatetotalconfirmed, label=state[ind[1]] * " Daily Cases", framestyle=:box, title = titlestr)
for i = 1:length(ind)
confirmi = dcountyconfirmed[i];
#ind0 = findall(confirmi .== 0);
#ind0 = isnan.(confirmi);
#confirmi[ind0] .= NaN;
Plots.plot!(tstate[2:end], confirmi, label=county[ind[i]])
end
#Plots.plot(dCOVID19state, framestyle=:box, title=state[ind[1]] * " - Daily New COVID-19 Cases " * "on " * string(t[end])[1:10] * ": " * dstatetotalconfirmed_strfmt, marker = (2, :circle, 2), markerstrokewidth = 0)
#Plots.plot(dCOVID19state)
local dstatetotalconfirmedpc_strfmt = Formatting.format.(dstatetotalconfirmed[end] / sum(population) * 1.0e5, commas=true, precision = 3);
local titlestr=state[ind[1]] * " - Daily New COVID-19 Cases / 100k " * "on " * string(t[end])[1:10] * ": " * dstatetotalconfirmedpc_strfmt;
local dCOVID19statepc = Plots.plot(tstate[2:end], dstatetotalconfirmed / sum(population) * 1.0e5, label=state[ind[1]] * " Daily Cases", framestyle=:box, title = titlestr);
for i = 1:length(ind)
# 92, 125
confirmi = dcountyconfirmedpc[i];
#ind0 = findall(confirmi .== NaN);
#ind0 = isnan.(confirmi);
#confirmi[ind0] .= NaN;
Plots.plot!(tstate[2:end], confirmi, label=county[ind[i]])
end
#Plots.plot(dCOVID19statepc, framestyle=:box, title=state[ind[1]] * " - Daily New COVID-19 Cases per 100k " * "on " * string(t[end])[1:10] * ": " * dstatetotalconfirmedpc_strfmt, marker = (2, :circle, 2), markerstrokewidth = 0)
#Plots.plot(dCOVID19statepc)
#for i = 1:length(ind)
# display(i)
# a = findall(isnan.(dcountyconfirmedpc[i]) .== 1)
# display(a)
#end
local totaldeath_strfmt = Formatting.format.(totaldeath[end], commas=true);
local titlestr="US - COVID-19 Death " * "as of " * string(t[end])[1:10] * ": " * totaldeath_strfmt;
local pCOVID19usaD = Plots.plot(t, totaldeath, label="USA Total Deaths", yscale=:log10, ylim=(1,10^6.0), framestyle=:box, title = titlestr)
for si = 1:length(ustate)
deathi = statedeath[si];
ind0 = findall(deathi .== 0.0);
deathi[ind0] .= NaN;
if length(ind0) != length(deathi) # if everything is NaN, don't try to plot
Plots.plot!(t, deathi, label=ustate[si])
end
end
#Plots.plot(pCOVID19usaD)
local dtotaldeath_strfmt = Formatting.format.(dtotaldeath[end], commas=true);
local titlestr = "US - Daily COVID-19 Deaths " * "on " * string(t[end])[1:10] * ": " * dtotaldeath_strfmt;
local dCOVID19usaD = Plots.plot(t[2:end], dtotaldeath, framestyle=:box, label="USA Daily Deaths", title = titlestr)
for si = 1:length(ustate)
deathi = dstatedeath[si];
#ind0 = findall(deathi .== 0);
#deathi[ind0] .= NaN;
Plots.plot!(t[2:end], deathi, label=ustate[si])
end
#Plots.plot(dCOVID19usa, xrotation=20, size=(800,500), legend=:outertopright, framestyle=:box, title="US - Daily Confirmed COVID-19 Cases", line = (:dot, 2), marker = ([:hex :d], 2, 0.8, Plots.stroke(0, :gray)), markerstrokewidth = 0)
#Plots.plot(dCOVID19usaD, framestyle=:box, title="US - Daily COVID-19 Deaths " * "on " * string(t[end])[1:10] * ": " * dtotaldeath_strfmt, marker = (2, :circle, 2), markerstrokewidth = 0)
#Plots.plot(dCOVID19usaD)
local statetotaldeath_strfmt = Formatting.format.(statetotaldeath[end], commas=true);
local titlestr = state[ind[1]] * " - COVID-19 Deaths " * "as of " * string(t[end])[1:10] * ": " * statetotaldeath_strfmt;
local pCOVID19stateD = Plots.plot(t, statetotaldeath, label=state[ind[1]] * " Total", yscale=:log10, framestyle=:box, title = titlestr)
for i = 1:length(ind)
deathi = Float64.(deepcopy(covid19us[ind[i]].death[tind]));
ind0 = findall(deathi .== 0.0);
deathi[ind0] .= NaN;
if length(ind0) != length(deathi) # if everything is NaN, don't try to plot
Plots.plot!(covid19us[ind[i]].time[tind], deathi, label=county[ind[i]])
end
end
#Plots.plot(pCOVID19stateD, title=state[ind[1]] * " - COVID-19 Deaths " * "as of " * string(t[end])[1:10] * ": " * statetotaldeath_strfmt)
local dstatetotaldeath_strfmt = Formatting.format.(dstatetotaldeath[end], commas=true);
local titlestr = state[ind[1]] * " - Daily COVID-19 Deaths " * "on " * string(t[end])[1:10] * ": " * dstatetotaldeath_strfmt;
local dCOVID19stateD = Plots.plot(tstate[2:end], dstatetotaldeath, label=state[ind[1]] * " Daily Death", framestyle=:box, title = titlestr)
for i = 1:length(ind)
deathi = dcountydeath[i];
#ind0 = findall(deathi .== 0);
#deathi[ind0] .= NaN;
Plots.plot!(tstate[2:end], deathi, label=county[ind[i]])
end
#Plots.plot(dCOVID19stateD, framestyle=:box, title=state[ind[1]] * " - Daily COVID-19 Deaths " * "on " * string(t[end])[1:10] * ": " * dstatetotaldeath_strfmt, marker = (2, :circle, 2), markerstrokewidth = 0)
#Plots.plot(dCOVID19stateD, title=state[ind[1]] * " - Daily COVID-19 Deaths " * "on " * string(t[end])[1:10] * ": " * dstatetotaldeath_strfmt)
local dstatetotaldeathpc_strfmt = Formatting.format.(dstatetotaldeath[end] / sum(population) * 1.0e5, commas=true, precision = 3);
local titlestr = state[ind[1]] * " - Daily COVID-19 Deaths / 100k " * "on " * string(t[end])[1:10] * ": " * dstatetotaldeathpc_strfmt;
local dCOVID19statepcD = Plots.plot(tstate[2:end], dstatetotaldeath / sum(population) * 1.0e5, label=state[ind[1]] * " Daily Death", framestyle=:box, title = titlestr)
for i = 1:length(ind)
deathi = dcountydeathpc[i];
#ind0 = findall(deathi .== 0);
#deathi[ind0] .= NaN;
#display([i length(deathi)])
Plots.plot!(tstate[2:end], deathi, label=county[ind[i]])
end
#Plots.plot(dCOVID19statepcD, framestyle=:box, title=state[ind[1]] * " - Daily COVID-19 Deaths per 100k " * "on " * string(t[end])[1:10] * ": " * dstatetotaldeathpc_strfmt, marker = (2, :circle, 2), markerstrokewidth = 0)
#Plots.plot(dCOVID19statepcD, title=state[ind[1]] * " - Daily COVID-19 Deaths / 100k " * "on " * string(t[end])[1:10] * ": " * dstatetotaldeathpc_strfmt)
#covid19plot_confirmed = Plots.plot(pCOVID19usa, dCOVID19usa, pCOVID19state, dCOVID19state, dCOVID19statepc, layout = l8out, xrotation=30, size=(800,900), xticks = t[1:7:end], legend=:false);
#covid19plot_death = Plots.plot(pCOVID19usa, dCOVID19usa, pCOVID19state, dCOVID19state, dCOVID19statepc, layout = l8out, xrotation=30, size=(800,900), xticks = t[1:7:end], legend=:false);
local covid19plot = Plots.plot(pCOVID19usa, pCOVID19usaD, dCOVID19usa, dCOVID19usaD, pCOVID19state, pCOVID19stateD, dCOVID19state, dCOVID19stateD, dCOVID19statepc, dCOVID19statepcD, layout = l8out, xrotation=30, size=reasonable_resolution(), xticks = t[1:31:end], legend=:false);
local figoutdir = "../covid19_public/timeseries/";
#Plots.savefig(covid19plot_confirmed, figoutdir * "covid19ts_confirmed_" * filter(x -> !isspace(x), state_of_interest) * ".html")
#Plots.savefig(covid19plot_death, figoutdir * "covid19ts_death_" * filter(x -> !isspace(x), state_of_interest) * ".html")
@time Plots.savefig(covid19plot, figoutdir * "covid19ts_integrated_" * filter(x -> !isspace(x), state_of_interest) * ".html")
#gui(covid19plot)
#sleep(1.0)
end