Python library to facilitate genome assembly, annotation, and comparative genomics
A genome visualization python package for comparative genomics
Guided synteny alignment between duplicated genomes (within specified quota constraint)
CoGe (Comparative Genomics) Platform
Federating genomes with love (and synteny derived from functional annotations)
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…
A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes
Synteny Mapping and Analysis Program
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
An R package to infer and analyze synteny networks from protein sequences
Pipelines for the production of Treeval data
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
Finding regions of similarity between plasmids
AccuSyn: An Accurate Web-based Genome Synteny Browser
Query sequence database by HMMs arranged in predefined synteny structure
Pipeline to create phage genome synteny graphics from genbank files
CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology
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