Privacy-preserving generative deep neural networks support clinical data sharing

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

Data and code related to the paper "ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa..." Jie Tan, et al · mSystems · 2016

Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously

PUG Bot to use with G5API

Supplement to the report in https://greenelab.github.io/czi-hca-report/

Scripts and data for re-creating TDM results.

This repository is in support of the PathCORE-T paper (https://doi.org/10.1101/147645). It contains all the code and necessary data/metadata to repeat all analyses in the paper.

Data for the Sci-Hub Stats Browser

Case-control genetics datasets evolved to be epistatic

Evaluating the effect of technical sources of variability in large-scale gene expression compendia.

Repository associated with Song et al. manuscript describing a Network-wide Association Study of ADNI Cohorts.

Methods to build a network of pathway co-occurrence relationships out of expression signatures extracted from transcriptomic compendia.

PUBLICATION: High-throughput analysis of adaptation using barcoded strains of Saccharomyces cerevisiae

Forecast sales for 350+ supplement retail chain stores for next 2 months

This repository stores scripts and results for the case study in the ADAGE signature analysis paper.

Medication and supplements combo is a system that checks if the entered medications or supplements can be taken together or needs to be taken separately. Some medications do not have dangerous effects but can cause problems for the body to absorb them. In the system the user enters name and age then chooses if he/she wants medication or suppleme…