Convert your STDeconvolve-generated and EnrichR-decoded topics into Seurat spatial clustering information via AUCell
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Feb 7, 2025 - Jupyter Notebook
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stdeconvolve
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This repository provides an R-based pipeline for analyzing spatial RNA-seq data using Seurat, STDeconvolve, and Giotto. Designed to process and analyze spatial transcriptomics data through a sequence of well-defined steps, enabling in-depth exploration and interpretation of spatially resolved gene expression profiles.
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Feb 17, 2025 - R
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