A versatile pairwise aligner for genomic and spliced nucleotide sequences
-
Updated
Nov 18, 2024 - C
#
spliced-alignment
Here are 6 public repositories matching this topic...
Rust bindings to minimap2 library
-
Updated
Dec 4, 2024 - Rust
✂️ Deep learning-based splice site predictor that improves spliced alignments
rna-seq deep-learning annotation alignment convolutional-neural-networks residual-networks spliced-alignment splice-junctions splicing transcript-assembly
-
Updated
Oct 24, 2024 - C++
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
bash bioinformatics rna-seq genomics ngs gene-expression bioinformatics-pipeline alignment star quantification transcriptomics illumina rsem ngs-analysis fastqc spliced-alignment stringtie splice-aware
-
Updated
Nov 29, 2024 - Shell
all the scripts to reproduce the results in the splam paper
-
Updated
May 10, 2024 - Python
This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.
bioinformatics quality-control rna-seq genomics data-analysis transcriptomics rna-seq-analysis spliced-alignment splice-junctions differential-splicing splice-variants junctionseq qorts
-
Updated
Jun 7, 2023 - R
Improve this page
Add a description, image, and links to the spliced-alignment topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the spliced-alignment topic, visit your repo's landing page and select "manage topics."