ABRA2

✂️ Deep learning-based splice site predictor that improves spliced alignments

Splice junction analysis and filtering from BAM files

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

45k context transformer for splice site prediction implemented with PyTorch. The code will be added soon.

Toolkit and pipeline for processing short- and long-read RNA sequencing data.

Deep neural network for splice sites prediction

Splicing assembly for non-model organisms using RNAseq data

This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.

Classification of Splice Junction sites using Neural Networks with Python and Keras

A tool to create sequences for primers targeting exon-exon splice junctions

Comparing translation of open reading frames within individual transcripts

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".